User: priess1991

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priess19910
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Posts by priess1991

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Human genome full chromosomes build
... Thank you! This helps me very much. I will use that data. ...
written 3.6 years ago by priess19910
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Comment: A: Human genome full chromosomes build
... Thanks you for your answers!  I try to reproduce some results published in the paper RCSI: Scalable similarity search in thousand(s) of genomes they used the data from the human genome project and the genome data they used was around 3.2 gb each. I want to use them for compression and substring sea ...
written 3.6 years ago by priess19910
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Human genome full chromosomes build
... Hi! I need to use some data of the 1000 human genome project. On 1000genomes.org's ftp-server I found all data in form of  14gb big cram files. I tried to use cramtools in order to get something I could use in java without success. I searched all around and found that on http://www.1000genomes.org/ ...
genome written 3.6 years ago by priess19910
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Comment: A: Java fastq String sequence reader
... At first, thanks for your answers! I never studied this, but have to deal with it now in connection with my bachelor thesis, so all my knowledge is self-induced. Sorry for that. I was aware of how the .fastq-files are structured, but I thought if if this two files contain all the raw reads of the ...
written 3.6 years ago by priess19910
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Java fastq String sequence reader
... Hi! I'm not schooled very much in bioinformatiks that's why i'm hoping there is a better way to do this. I want to test an index-based compression method which highly scales with the similarity between a sequence and a reference-sequence. In order to do that i need some genomes from the 1000 human ...
sequencing written 3.6 years ago by priess19910
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Reading FASTA with BioJava 4.0.0
... HI!  I searched for possible solutions but did not find anything helpful. I'm trying to use the Gen Ontology sequence database in order to test an algorithm my professor gave to me on this huge set of data. I thought the easiest way would be to read out the FASTA-file via BioJava.  It is the first ...
software error rna-seq written 4.0 years ago by priess19910 • updated 4.0 years ago by Jose Manuel Duarte290

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