User: ntmarshall406

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Posts by ntmarshall406

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Comment: C: Blastp Error 303.7
... I am sorry but I do not know how I am supposed to do this. I have downloaded the newest version just onto my Desktop for now, as I have been having problems getting it to work. So even if I move my files into ncbi-blast-2.7.1+ folder, and then run the blastn command from there, I get the same erro ...
written 3 days ago by ntmarshall4060
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Comment: C: Blastp Error 303.7
... This is probably a simple answer, but I am having this same issue. I have downloaded the newest version of blast (v.2.7.1) but when ever I use blastn I get Error: (303.7) [URL_Connect]......It looks like I am still using BLAST 2.2.25+, but I downloaded and installed BLAST 2.7.1. So how do I switch ...
written 3 days ago by ntmarshall4060
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Comment: C: Obtain NCBI Taxonomy ID from local blast output
... Well all of those settings worked fine except for staxids.  So there must be something wrong with my taxdb or the PATH is not set up correctly. ...
written 2.5 years ago by ntmarshall4060
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Comment: C: Obtain NCBI Taxonomy ID from local blast output
... Yes I just want to know the species identity (or close identity) of each of my sequences.  There must be something wrong with the PATH to my taxdb because other settings such as sacc, sseqid, evalue, bitsocre all work correctly. ...
written 2.5 years ago by ntmarshall4060
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Obtain NCBI Taxonomy ID from local blast output
... I was wondering how to obtain just the scientific name from a blast search.  I currently have 10,000 sequences that I would like to blast with nt database.  I am only interested in the taxid, so I have would like to end up with a csv file that has the queryid followed by the taxid.  I set up my BLAS ...
blast written 2.5 years ago by ntmarshall4060 • updated 2.5 years ago by arnstrm1.6k
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Comment: C: Scientific Names In Blast Output And Databases
... I know this was 22 months ago but hopefully people still look at this.  So I was wondering the same question as you Carlos.  I currently have 10,000 sequences that I would like to blast with nt database.  I am only interested in the taxid.  So I set up my BLASTDB and downloaded the taxdb and set it ...
written 2.5 years ago by ntmarshall4060

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Popular Question 2.5 years ago, created a question with more than 1,000 views. For Obtain NCBI Taxonomy ID from local blast output

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