User: dimkal

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dimkal730
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Posts by dimkal

<prev • 74 results • page 1 of 8 • next >
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Comment: C: Python Tool To Assign Secondary Structure Elements To A 3D/Pdb Structure
... at the moment i care about the code's readability and ease of use. python, is preferred language. Perhaps the answer to my question is that no alternatives exist since the original codes works so well. That's perfectly acceptable. I'm having hard time to believe that nobody implemented any of th ...
written 6.7 years ago by dimkal730
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Comment: C: Python Tool To Assign Secondary Structure Elements To A 3D/Pdb Structure
... there are a bunch of reasons why python can be preferred over c/fortran -- easier to redistribute, easier to read, modify, extend, no need to deal with compilers. -d ...
written 6.7 years ago by dimkal730
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Python Tool To Assign Secondary Structure Elements To A 3D/Pdb Structure
... Does anybody know if there's an a python alternative to STRIDE or DSSP for assigning secondary structure elements to protein structures? Thanks, Dima ...
pdb python written 6.7 years ago by dimkal730 • updated 2.5 years ago by Biostar ♦♦ 20
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Convert Fasta To Nicely Formatted Html
... Hi everyone, does anybody aware of a simple script (preferably python) that would convert a fasta file (with one protein sequence) to a an HTML code? For example if the sequence is 340 residues long, the script would do the wrapping every 50 residues(or as many as requested), then perhaps color som ...
fasta sequence written 6.8 years ago by dimkal730
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Comment: C: What Are The Most Influential Cadd Papers Of 2011?
... looks like it's a paid service. correct me if i'm wrong. ...
written 7.1 years ago by dimkal730
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Comment: C: Drawing Schematic Of Protein-Protein Interactions
... ok this was my result: http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=x081&code=173341 where's the protein-protein interaction in the report? ...
written 7.2 years ago by dimkal730
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Comment: C: Drawing Schematic Of Protein-Protein Interactions
... can you please point me to the output? i submitted an example on the site, but still waiting for results to be emailed. ...
written 7.2 years ago by dimkal730
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Comment: C: Drawing Schematic Of Protein-Protein Interactions
... it's good for showing networks of protein-protein interactions, but not specific interactions, on amino-acid level. ...
written 7.2 years ago by dimkal730
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Comment: C: Drawing Schematic Of Protein-Protein Interactions
... yes i'm aware of that, but i'm looking for a schematic-way, a simplified view. 3d views of surfaces can get complicated. ...
written 7.2 years ago by dimkal730
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Comment: C: Drawing Schematic Of Protein-Protein Interactions
... that's not exactly what i'm requesting. I'm not interested in representing networks of protein interactions, but protein-protein surfaces, with specific amino-acids contacts. ...
written 7.2 years ago by dimkal730

Latest awards to dimkal

Popular Question 5.6 years ago, created a question with more than 1,000 views. For Md Simulation Of Protein-Ligand Complex
Great Question 5.9 years ago, created a question with more than 5,000 views. For Converting Smiles To Iupac Chemical Name?
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Converting Smiles To Iupac Chemical Name?
Teacher 5.9 years ago, created an answer with at least 3 up-votes. For A: Indexing A List For Extracting X,Y,Z Coordinates From A Pdb File
Teacher 5.9 years ago, created an answer with at least 3 up-votes. For A: How To Find Absent Atoms In Residue Of Pdb File
Appreciated 6.5 years ago, created a post with more than 5 votes. For A: Indexing A List For Extracting X,Y,Z Coordinates From A Pdb File
Popular Question 6.5 years ago, created a question with more than 1,000 views. For Taking The Average Of A Dihedral Angle
Popular Question 6.5 years ago, created a question with more than 1,000 views. For Converting Smiles To Iupac Chemical Name?
Supporter 6.5 years ago, voted at least 25 times.
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: Indexing A List For Extracting X,Y,Z Coordinates From A Pdb File
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: How To Find Absent Atoms In Residue Of Pdb File
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: Linear Or 2D Representation Of Protein Sequence Secondary Structure
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: Library For Generating Protein Conformations
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: Protein Structure Reconstruction
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: Angle Phi, Psi In Python
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: N-Gram Plots Using Pmc Or Pubmed Abstracts
Student 6.5 years ago, asked a question with at least 3 up-votes. For Converting Smiles To Iupac Chemical Name?
Student 6.5 years ago, asked a question with at least 3 up-votes. For What Are The Most Influential Cadd Papers Of 2011?

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