User: trausch
trausch • 1.4k
- Reputation:
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- https://tobiasrausch.com/
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Posts by trausch
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... [Silica][1] searches (multiple) PCR primers across entire genomes using primer3's thermodynamic calculations. It's an installation-free, open-source in-silico PCR web application: [https://www.gear-genomics.com/silica/][2]
[1]: https://www.gear-genomics.com/silica/
[2]: https://www.gear-genomi ...
written 2 days ago by
trausch • 1.4k
0
votes
3
answers
81
views
3
answers
... bcftools stats -s - | grep "^PSC"-B 1 ...
written 3 days ago by
trausch • 1.4k
0
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0
answers
99
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0
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... I think, & and && have different meanings, see this [filtering tutorial][1].
[1]: http://samtools.github.io/bcftools/howtos/filtering.html ...
written 27 days ago by
trausch • 1.4k
0
votes
1
answer
2.6k
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1
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... Updated the link. The section about delly is "SV Calling" ...
written 6 weeks ago by
trausch • 1.4k
0
votes
1
answer
176
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1
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... [ExAC][1] published an interval list of callable regions for WES. In our experience this interval list is pretty well covered by all exome capture kits (illumina, Agilent, ...) and thus, good for QC and coverage analysis purposes. Coordinates are hg19/GRCh37. There are plenty of tools to then calcul ...
written 6 weeks ago by
trausch • 1.4k
1
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2
answers
1.3k
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2
answers
... We recently developed [Tracy][1] to analyze Sanger sequencing data, works from the command-line and using [web applications][2].
[1]: https://github.com/gear-genomics/tracy
[2]: http://www.gear-genomics.com/ ...
written 10 weeks ago by
trausch • 1.4k
0
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2
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1.3k
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2
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Comment:
C: Sanger sequencing data analysis
... The novoSNP URL appears to be dead. Is there an updated one? ...
written 10 weeks ago by
trausch • 1.4k
0
votes
2
answers
164
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2
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... I think [snpEff][1] can annotate SVs from Delly and Manta in VCF format for potential gene fusions.
[1]: http://snpeff.sourceforge.net/ ...
written 10 weeks ago by
trausch • 1.4k
4
votes
2
answers
197
views
2
answers
... For [delly][1], it doesn't make a difference if split reads are marked as secondary or supplementary.
[1]: https://github.com/dellytools/delly ...
written 3 months ago by
trausch • 1.4k
0
votes
1
answer
107
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1
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... I am not sure I fully understand your question. If you want all primer binding sites and possible amplicons across a genome for your multiplexed qPCR design then this tool should work: [https://www.gear-genomics.com/silica/][1]
[1]: https://www.gear-genomics.com/silica/ ...
written 3 months ago by
trausch • 1.4k
Latest awards to trausch
Scholar
8 weeks ago,
created an answer that has been accepted.
For A: updating vcf file from rsIDs of dbsnp138 to dbsnp144
Scholar
3 months ago,
created an answer that has been accepted.
For A: updating vcf file from rsIDs of dbsnp138 to dbsnp144
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3 months ago,
created an answer that has been accepted.
For A: updating vcf file from rsIDs of dbsnp138 to dbsnp144
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3 months ago,
created an answer with at least 3 up-votes.
For A: Methods of classifying, not detecting, structural variation?
Good Answer
3 months ago,
created an answer that was upvoted at least 5 times.
For A: Get trace data for all four bases from ab1 file
Scholar
6 months ago,
created an answer that has been accepted.
For A: updating vcf file from rsIDs of dbsnp138 to dbsnp144
Teacher
6 months ago,
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For A: Methods of classifying, not detecting, structural variation?
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7 months ago,
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10 months ago,
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For A: Methods of classifying, not detecting, structural variation?
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17 months ago,
created an answer that has been accepted.
For A: updating vcf file from rsIDs of dbsnp138 to dbsnp144
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20 months ago,
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20 months ago,
created an answer with at least 3 up-votes.
For A: Methods of classifying, not detecting, structural variation?
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21 months ago,
created an answer that was upvoted at least 5 times.
For A: Get trace data for all four bases from ab1 file
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21 months ago,
received more than 100 upvotes.
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21 months ago,
created an answer with at least 3 up-votes.
For A: Methods of classifying, not detecting, structural variation?
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23 months ago,
created an answer with at least 3 up-votes.
For A: Methods of classifying, not detecting, structural variation?
Scholar
2.1 years ago,
created an answer that has been accepted.
For A: updating vcf file from rsIDs of dbsnp138 to dbsnp144
Teacher
2.1 years ago,
created an answer with at least 3 up-votes.
For A: Methods of classifying, not detecting, structural variation?
Good Answer
2.1 years ago,
created an answer that was upvoted at least 5 times.
For A: Get trace data for all four bases from ab1 file
Appreciated
2.1 years ago,
created a post with more than 5 votes.
For A: list of gene or transcript IDs and their length
Scholar
2.1 years ago,
created an answer that has been accepted.
For A: updating vcf file from rsIDs of dbsnp138 to dbsnp144
Teacher
2.1 years ago,
created an answer with at least 3 up-votes.
For A: Methods of classifying, not detecting, structural variation?
Teacher
2.4 years ago,
created an answer with at least 3 up-votes.
For A: Methods of classifying, not detecting, structural variation?
Appreciated
2.4 years ago,
created a post with more than 5 votes.
For A: list of gene or transcript IDs and their length
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