User: Gangcai

gravatar for Gangcai
Gangcai230
Reputation:
230
Status:
Trusted
Location:
Berlin Or Shanghai
Website:
http://www.biodm.com
Last seen:
6 years, 7 months ago
Joined:
9 years, 5 months ago
Email:
g********@gmail.com

Computational biologist who spends most of his time in mining the illumina high-through put sequencing data for answering certain interesting biological questions.

Posts by Gangcai

<prev • 25 results • page 1 of 3 • next >
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Answer: C: How To View The Source Code Of Ggplot2
... One inconvenient way is to check the source code directly: https://github.com/hadley/ggplot2/blob/master/R ...
written 6.6 years ago by Gangcai230
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How To View The Source Code Of Ggplot2
... Dear all, does anybody know how to check the source code of the functions of ggplot2? > stat_density function (mapping = NULL, data = NULL, geom = "area", position = "stack", adjust = 1, kernel = "gaussian", trim = FALSE, na.rm = FALSE, ...) { StatDensity$new(mapping = mapping, d ...
R written 6.6 years ago by Gangcai230 • updated 6.5 years ago by Biostar ♦♦ 20
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Comment: C: Key Passphrase For Ascp File Transfer (Ebi, Ncbi)
... I have tried (change putty to openssh),and it works: ascp -QT -l 100m -i ~/.aspera/connect/etc/asperaweb_id_dsa.openssh era-fasp@fasp.sra.ebi.ac.uk:/vol1/ERA012/ERA012008/sff/library08_GJ6U61T06.sff ./ ...
written 6.7 years ago by Gangcai230 • updated 9 weeks ago by RamRS30k
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Key Passphrase For Ascp File Transfer (Ebi, Ncbi)
... Dear all, I have one problem to use ASCP to download SRA files from EBI. When I try to download through ascp, it requires to enter in Key passphrase, however I couldn't find where to get it (searched around but no answer). Does anybody have some idea about this? Many thanks. $ascp -QT -l 100m -i ~/ ...
ncbi file written 6.7 years ago by Gangcai230 • updated 9 weeks ago by Shicheng Guo8.4k
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Comment: C: Download Geo Sra Data Using Aspera Connect
... Hi, have you solved this problem. I have added asperaweb_id_dsa.putty, but still need Key passphrase. Where could I get this Key passphrase? Thanks. ...
written 6.7 years ago by Gangcai230
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Comment: C: How To Get Non-Snp Sites Or Invariant Sites Based On 1000 Genomes Project
... Hi Pierre, thanks for your reply. For the first step, which should be the input file? I have checked the 1000 genomes release files, they seems only contain the sequencing information for variant sites (eg SNPs, INDELs, SVS) but no invariant sites or monomorphic sites. ...
written 7.3 years ago by Gangcai230
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Comment: C: How To Get Non-Snp Sites Or Invariant Sites Based On 1000 Genomes Project
... The vcf file by definition can record monomorphic sites (sites without alternate alleles), however the vcf files from the 1000 genomes release (ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521/) seems only contain SNPs, INDELS, SVS but no monomorphic or invariant sites. ...
written 7.3 years ago by Gangcai230
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How To Get Non-Snp Sites Or Invariant Sites Based On 1000 Genomes Project
... Hi everyone, I need to find the human genomic sites which are invariant among all the individuals (identified by sequencing in all individuals and also without SNP). I know the sites which are not included in the 38 million SNPs identified by the 1000 genome project are possible candidates. However, ...
1000genomes snp written 7.3 years ago by Gangcai230 • updated 7.0 years ago by esha.sharma0
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What Does The Int Mean In Hervl-Int Output By Repeatmasker
... Dear all, Does anybody know the meaning of int in the repeatname output by Repeatmasker? Such as the -int in HERVL-int. Thanks. ...
repeats repeatmasker written 8.7 years ago by Gangcai230 • updated 8.7 years ago by Casey Bergman18k
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How To Read Bam File Line By Line Using Ruby
... Dear all, I am trying to read bam file line by line by using ruby scripts. Although there is ruby gem bio-samtools(http://rubygems.org/gems/bio-samtools), I don't find a way to read the whole bam file line by line(can get the alignments for given genomic regions). Any suggestion will be appreciat ...
bam file written 8.7 years ago by Gangcai230

Latest awards to Gangcai

Autobiographer 6.6 years ago, has more than 80 characters in the information field of the user's profile.
Appreciated 6.6 years ago, created a post with more than 5 votes. For C: How To View The Source Code Of Ggplot2
Commentator 6.6 years ago, created a comment with at least 3 up-votes. For C: How To View The Source Code Of Ggplot2
Popular Question 9.4 years ago, created a question with more than 1,000 views. For What Does This Cigar Mean?
Student 9.4 years ago, asked a question with at least 3 up-votes. For Does Anybody Use The Software Provided By Illumina To Do Illumina Sequencing Analyzing?
Popular Question 9.4 years ago, created a question with more than 1,000 views. For How To Efficiently Pair The Pair-End Sequencing Reads?

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