User: Russ

gravatar for Russ
Russ470
Reputation:
470
Status:
Trusted
Location:
Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada
Last seen:
4 days, 7 hours ago
Joined:
5 years ago
Email:
r*******@uoguelph.ca

Posts by Russ

<prev • 55 results • page 1 of 6 • next >
1
vote
0
answers
233
views
0
answers
Comment: C: Extracting gene symbols from gene assignments in exon array data
... It's hard to propose help when your problem is not completely described in the original question. The following works for me, could it be adapted to your data? > a <- as.factor("NM_001156474 // CCDC81 // coiled-coil domain containing 81 // 11q14.2 // 60494 /// NM_021827 // CCDC81 // ...
written 11 months ago by Russ470
0
votes
0
answers
233
views
0
answers
Comment: C: Extracting gene symbols from gene assignments in exon array data
... Have you tried the `strsplit` function in R? ...
written 11 months ago by Russ470
0
votes
0
answers
850
views
0
answers
Job: Assistant/Associate Professor - Animal Disease Genomics and Bioinformatics, Department of Pathobiology, University of Guelph, Guelph, Canada
... Faculty Positions Position Title / Rank: Assistant/Associate Professor - Animal Disease Genomics and Bioinformatics College: Ontario Veterinary College Department: Pathobiology Date Posted: October 16, 2018 Deadline: December 7, 2018 Please reference AD #18-60 Position Description: The Depart ...
bioinformatics animal job genomics veterinary written 20 months ago by Russ470 • updated 20 months ago by genomax85k
0
votes
1
answer
444
views
1
answers
Answer: A: Plot of 2 replicates
... So this works for me: size_normalized_Counts_by_condition1$condition <- sub("_", "-", size_normalized_Counts_by_condition$condition) size_normalized_Counts_by_condition1$condition <- sub("_", "-", size_normalized_Counts_by_condition1$condition) size_normalized_counts_by_cond ...
written 21 months ago by Russ470
0
votes
1
answer
444
views
1
answers
Comment: C: Plot of 2 replicates
... Oh - sorry, I misunderstood. Check out the `separate` command in tidyr, it's specifically designed to do what you're looking for (split one column into 2). You want to separate the data based on the third underscore in your condition name, correct? My regex isn't good enough to identify the third oc ...
written 21 months ago by Russ470
3
votes
2
answers
514
views
2
answers
Answer: A: Extracting a specific string pattern from a list of objects
... There's probably a nifty regex one liner that will accomplish the task more efficiently, but my strategy is simple and works: vcf1 <- gsub("-TCGA-", "", vcf) vcf2 <- gsub("-[0-9][0-9].vcf", "", vcf1) vcf3 <- gsub("-", "", vcf2) > vcf3 [1] "OV051456" "OV054578" " ...
written 21 months ago by Russ470
0
votes
2
answers
514
views
2
answers
Comment: C: Extracting a specific string pattern from a list of objects
... I also find regex confusing, and often refer to this site to help me: [https://regexr.com/][1] It has good information, cheatsheets, guides, and a live editor in which you can play around with your expressions. [1]: https://regexr.com/ ...
written 21 months ago by Russ470
0
votes
1
answer
444
views
1
answers
Comment: C: Plot of 2 replicates
... I'm not 100% clear on what you're looking for, what you've tried, and what packages you're using. If I assume that you want to create a bar plot using ggplot2, here's what I would do: Separate your "condition" column into two columns (using separate from the tidyr package) into something like c("co ...
written 21 months ago by Russ470
0
votes
1
answer
3.0k
views
1
answers
Comment: C: ggplot2 problem with Date format
... In the code snippet using `as.Date` you refer to the event_date column - how are the dates formatted in this column? is it the same as the "Date" column in the original data you showed us? If so, have a look at the `as.Date` help file: > "A character string. If not specified, it will try "%Y-%m- ...
written 21 months ago by Russ470
0
votes
3
answers
643
views
3
answers
Comment: C: Colouring a string
... Yeah, I agree with jrj.healey, I'd probably just take a screenshot... ...
written 21 months ago by Russ470

Latest awards to Russ

Good Answer 20 months ago, created an answer that was upvoted at least 5 times. For A: Difference between FC and LogFC
Scholar 21 months ago, created an answer that has been accepted. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Teacher 21 months ago, created an answer with at least 3 up-votes. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Appreciated 21 months ago, created a post with more than 5 votes. For A: Difference between FC and LogFC
Teacher 21 months ago, created an answer with at least 3 up-votes. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Appreciated 2.2 years ago, created a post with more than 5 votes. For A: Difference between FC and LogFC
Scholar 2.2 years ago, created an answer that has been accepted. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Scholar 2.3 years ago, created an answer that has been accepted. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Allelic association tests for polyploid data
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Scholar 2.7 years ago, created an answer that has been accepted. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Supporter 2.8 years ago, voted at least 25 times.
Scholar 2.8 years ago, created an answer that has been accepted. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For C: StringTie "missing header error" [for both HISAT2 and STAR alignment files]

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 962 users visited in the last hour