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Answer: Answer: Normalizing read counts while having multiple group of samples with different co
3.1 years ago by seidel 11k
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1.8k
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Comment: Comment: Writing a function in R which will identify peaks within a data frame
3.2 years ago by seidel 11k
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963
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Answer: Answer: quantify how many reads detect ORF9 and ORF10
3.2 years ago by seidel 11k
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1.4k
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Comment: Comment: getting the coordinates of mapped regions from a bam file
3.2 years ago by seidel 11k
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2.9k
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Comment: Comment: how many sequences are in genome file
3.3 years ago by seidel 11k
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837
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Comment: Comment: Deconvolution blood RNASeq samples
3.3 years ago by seidel 11k
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1.7k
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Answer: Answer: Code to find the list of genes in the DEG table in R?
3.3 years ago by seidel 11k
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1.2k
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Comment: Comment: Struggling with some data visualization in R
3.3 years ago by seidel 11k
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995
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Comment: Comment: Making duplicate reads in Bam file
3.3 years ago by seidel 11k
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571
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Comment: Comment: How to get sequence combination with Rsamtools?
3.3 years ago by seidel 11k
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712
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Comment: Comment: Delete individuals
3.3 years ago by seidel 11k
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2.4k
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Comment: Comment: Split paired-end fastq files by lane
3.3 years ago by seidel 11k
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2.4k
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Comment: Comment: Split paired-end fastq files by lane
3.3 years ago by seidel 11k
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2.0k
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Comment: Comment: Should I wait for finishing the BWA MEM alignment?
3.3 years ago by seidel 11k
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880
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Answer: Answer: How to do RNA-Seq metadata analysis?
3.3 years ago by seidel 11k
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2.4k
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Answer: Answer: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
3.4 years ago by seidel 11k
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1
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4.3k
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Comment: Comment: Genes encoded on both strands of DNA?
3.4 years ago by seidel 11k
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1.4k
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Answer: Answer: RNA-Seq with more conditions
3.4 years ago by seidel 11k
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2.7k
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Comment: Comment: Analysis tools for scTCR-seq?
3.5 years ago by seidel 11k
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1.3k
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Answer: Answer: Bowtie produced empty .sam file
3.5 years ago by seidel 11k
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788
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Comment: Comment: Error: Could not open the input file
3.5 years ago by seidel 11k
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1.3k
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Comment: Comment: Downloading BioSample records
3.5 years ago by seidel 11k
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1.5k
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Comment: Comment: Can we use 'SCT normalization' to find anchors and 'LogNormalize' for the integr
3.5 years ago by seidel 11k
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2
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1.3k
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Comment: Comment: Downloading BioSample records
3.5 years ago by seidel 11k
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1.5k
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Comment: Comment: ChIP-Seq r
3.5 years ago by seidel 11k
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1
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1.7k
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Comment: Comment: What could be a good balance between baseMean and Log2FoldChange?
3.5 years ago by seidel 11k
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1.4k
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Comment: Comment: Genome index problem
3.5 years ago by seidel 11k
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2.2k
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Comment: Comment: Normalize ChIP-seq samples with different signal-to-noise ratio
3.5 years ago by seidel 11k
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1.2k
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Comment: Comment: evaluation of Seurat clustering
3.5 years ago by seidel 11k
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1.2k
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Comment: Comment: evaluation of Seurat clustering
3.5 years ago by seidel 11k
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3.2k
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Comment: Comment: Where can I download some example BAM files?
3.5 years ago by seidel 11k
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989
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Comment: Comment: Differntial Gene Expression analysis
3.5 years ago by seidel 11k
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2.4k
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Comment: Comment: How can I find genes located in the same region (overlapping) of the chromosome
3.5 years ago by seidel 11k
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1
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2.4k
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Comment: Comment: How can I find genes located in the same region (overlapping) of the chromosome
3.5 years ago by seidel 11k
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1.3k
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Answer: Answer: RNA-Sequencing on RStudio vs batch scripts on Terminal
3.5 years ago by seidel 11k
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1
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928
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Comment: Comment: Ranked fold changes for non-replicated data
3.5 years ago by seidel 11k
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1
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2.4k
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Comment: Comment: How can I find genes located in the same region (overlapping) of the chromosome
3.6 years ago by seidel 11k
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902
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Comment: Comment: How to count STRs
3.6 years ago by seidel 11k
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831
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Comment: Comment: format change from .fasta to .daa
3.6 years ago by seidel 11k
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3.8k
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Answer: Answer: Counts vs TPM - Comparing gene expression within a sample
3.6 years ago by seidel 11k
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0
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15k
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Comment: Comment: Plotting overlapping lines in R
3.6 years ago by seidel 11k
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0
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15k
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Comment: Comment: Plotting overlapping lines in R
3.6 years ago by seidel 11k
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2
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15k
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Comment: Comment: Plotting overlapping lines in R
3.6 years ago by seidel 11k
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1
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3.1k
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Comment: Comment: What do we call a transcript?
3.6 years ago by seidel 11k
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1.7k
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Comment: Comment: How to speed up averaging peak signal overlapping with domains
3.6 years ago by seidel 11k
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0
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3.0k
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Comment: Comment: Spades is running over a week
3.6 years ago by seidel 11k
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2
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1.7k
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Answer: Answer: How to speed up averaging peak signal overlapping with domains
3.6 years ago by seidel 11k
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1.3k
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Comment: Comment: How to zoom in on sections of a heatmap using pheatmap package in R
3.6 years ago by seidel 11k
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1
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1.1k
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Answer: Answer: Is there any way to determine if a gene is due to contamination?
3.6 years ago by seidel 11k
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696
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Comment: Comment: How to compare specific genes between comparisons in RNA seq data
3.6 years ago by seidel 11k
868 results • Page 5 of 18
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