User: cying

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cying10
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New User
Location:
China
Last seen:
2 years, 8 months ago
Joined:
4 years ago
Email:
c****@i.shu.edu.cn

Posts by cying

<prev • 8 results • page 1 of 1 • next >
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Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Hi, in regard to the "days_to_new_tumor_event_after_initial_treatment", I think the smaller value was more reasonable than the higher one. The DFS was defined as the time from initial treatment until the date of new tumor event. And the first time of new tumor event should be selected instead of the ...
written 2.7 years ago by cying10
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... That's a good point, maybe the the blank space of "new_tumor_event_after_initial_treatement" column is a hint of no new tumor events. Thanks! ...
written 3.4 years ago by cying10
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Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Hi, TriS. Your tutorial is very helpful. I have done my own survival analysis using [clinical file before merged and cleaned][1], but actually, the merge clinical file downloaded from the FireBrowse is more concise. Here I list two questions: 1. "days_to_last_followup", you said that get the minm ...
written 3.4 years ago by cying10
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Answer: A: DIfference in survival times present in TCGA and cBIoPortal
... May be the survival time given by the cBioPortal is the nearest follow-up. Here(https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/) is the link of updated clinical information for all types of tumors. The follow up data is updated with the time.Anyway, you can count on ...
written 3.4 years ago by cying10
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Answer: A: TCGA clinical data analysis
... Check the link(https://tcga-data.nci.nih.gov/docs/dictionary/) of dictionary of TCGA clinical data to see if it helps. ...
written 3.4 years ago by cying10
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Answer: A: Clinical Survival data of TCGA
... Here(https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/) is the link of updated clinical information for all types of tumors. The follow up data is updated with the time. ...
written 3.4 years ago by cying10
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Answer: A: How to get SNP genotypes in somatic mutation files with MAF(Mutation Annotation
... I have made supplement about my questions, thank you! ...
written 4.0 years ago by cying10
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How to get SNP genotypes in somatic mutation files with MAF(Mutation Annotation Format) ?
...  Hi! Guys, I want to do some association researches between SNP genotypes and phenotypes in cancer patients, just like this article for investigating association between SNPs in UGT2B and breast cancer. I know SNP information is located in somatic mutation, while I have downloaded somatic mutation ...
maf files tcga genotype snp written 4.0 years ago by cying10

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