User: sst

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sst20
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20
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New User
Location:
United Kingdom
Last seen:
3 years, 4 months ago
Joined:
3 years, 11 months ago
Email:
s****@tetrinetsucht.de

Posts by sst

<prev • 3 results • page 1 of 1 • next >
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Answer: A: Speeding up NUCmer for de novo contig to reference alignment
... Never tried it, but http://bioinformatics.oxfordjournals.org/content/31/4/509.long claims to be an efficient drop-in replacement for MUMmer. ...
written 3.4 years ago by sst20
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Answer: A: Simulating early phase fragmented genome assembly
... I don't have any first-hand experience with this, but let me point you to this paper: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003998 -- the authors have done something similar in their benchmark steps to assess gene fragmentation with increasing sequence fragmentatio ...
written 3.7 years ago by sst20
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Functional enrichment on orthologous groups
... Hi all, I am currently looking at the evolution of the genome content of a particular species. I have >15 newly sequenced and annotated species, as well as a species tree and clusters of orthologs/paralogs ("orthogroups") across all species. Let's also say that I have, for each node in the speci ...
enrichment reactome evolution kegg go written 4.0 years ago by sst20 • updated 3.9 years ago by jhc2.8k

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