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User: yueli7

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yueli7 • 40
Reputation:
40
Status:
New User
Location:
China
Last seen:
1 week, 3 days ago
Joined:
4 years ago
Email:
y*****@126.com

Posts by yueli7

<prev • 83 results • page 1 of 9 • next >
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Comment: A: combine two RNA-seq files together
... Hello, everyone, I found the normal and cancer data in one dataset in GEO. Thanks for any help! Yue ...
written 11 days ago by yueli7 • 40
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Comment: C: combine two RNA-seq files together
... Hello, ATpoint, Thank you for your response! I'd better to compare in one dataset. But my boss want to me, compare the normal and cancer sample. Actually, there is not many normal sample in TCGA. I have to process the data from fastq? Thank you again! Yue ...
written 12 days ago by yueli7 • 40
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combine two RNA-seq files together
... Hello, I have two RNA_seq data, one is downloaded from cancer sample: https://tcga.xenahubs.net/download/TCGA.OV.sampleMap/HiSeqV2_percentile.gz, Rank genes RSEM values between 0% to 100% The other is normal tisssue: GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_tpm.gct.gz Gene TPMs. My quest ...
rna-seq written 12 days ago by yueli7 • 40
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Comment: C: peaks in IGV
... Hello, ATpoint, Thank you so much for your kindly response! Right click, change track height 100, set data range, set data range 0,0,6, and marker log scale. Right click, autoscale, log scale. Thanks again Best, Yue ![][2] ![][3] [1]: https://ibb.co/DRTNy7T [2]: https://ibb.co ...
written 14 days ago by yueli7 • 40 • updated 14 days ago by genomax ♦ 70k
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Comment: C: peaks in IGV
... Hello, WouterDeCoster, RamRS, Thank you so much for all of your's kindly response! ![enter image description here][1] [1]: https://i.ibb.co/6Y8mCb8/picture02.jpg ...
written 14 days ago by yueli7 • 40
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peaks in IGV
... Hello, I used https://github.com/taoliu/MACS/wiki/Build-Signal-Track to build signal track, and tried to use IGV to see my peaks. Why my peaks so strange? When I zoomed in, there is no peaks. Thanks in advance for any help! Best, Yue LI ![https://ibb.co/mJqgBqk][1] [1]: https://i.ibb.co/4 ...
chip-seq written 15 days ago by yueli7 • 40
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Comment: C: Build signal track
... administrator@ACB-Ubuntu:~/bedtools2-2.26.0/bin$ PATH=$PATH:~/bedtools2-2.26.0/bin ./bdg2bw.sh flag1_FE.bdg chromInfo.txt administrator@ACB-Ubuntu:~/bedtools2-2.26.0/bin$ PATH=$PATH:~/bedtools2-2.26.0/bin ./bdg2bw.sh flag1_logLR.bdg chromInfo.txt ...
written 15 days ago by yueli7 • 40
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Build signal track
... Hello, I followed the post https://github.com/taoliu/MACS/wiki/Build-Signal-Track "Fix the bedGraph and convert them to bigWig files And you will have these bigwig files: flag1_FE_01.bw and flag1_logLR.bw" Actually, I only have one file flag1_FE_01.bw. Thanks in advance for any help! Best, ...
chip-seq written 16 days ago by yueli7 • 40
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Comment: C: convert *.bdg file to *.bw file
... Hello, RamRs, Thank you so much for your remaining. It finally work! Thank you again! Best, Yue li administrator@Ab-Ubuntu:~/bedtools2-2.26.0/bin$ PATH=$PATH:~/bedtools2-2.26.0/bin ./bdg2bw.sh xaf.txt chromInfo.txt ...
written 16 days ago by yueli7 • 40 • updated 16 days ago by RamRS ♦ 22k
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Comment: C: convert *.bdg file to *.bw file
... Hello, RamRs, Thank you so much for your great help! Thank you again! Best, Yue administrator@ACB-HuangLab-Ubuntu:~/bedtools2-2.26.0/bin$ PATH=$PATH:~/bedtools2-2.26.0/bin sh bdg2bw.sh flag1_FE.bdg chromInfo.txt ...
written 17 days ago by yueli7 • 40

Latest awards to yueli7

Supporter 21 days ago, voted at least 25 times.
Popular Question 10 months ago, created a question with more than 1,000 views. For DESeq pvalue>0.05 qvalue=1
Popular Question 10 months ago, created a question with more than 1,000 views. For dependency plyr in R 2.15.1
Popular Question 11 months ago, created a question with more than 1,000 views. For DESeq pvalue>0.05 qvalue=1
Popular Question 4.0 years ago, created a question with more than 1,000 views. For dependency plyr in R 2.15.1
Popular Question 4.0 years ago, created a question with more than 1,000 views. For install qvalue in R
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