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User: yueli7

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yueli7 • 110
Reputation:
110
Status:
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Location:
China
Last seen:
16 hours ago
Joined:
4 years, 7 months ago
Email:
y*****@126.com

Posts by yueli7

<prev • 201 results • page 1 of 21 • next >
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(Closed) demo data of minnow
... Hello, I tried to use `Alevin` software. I followed https://combine-lab.github.io/alevin-tutorial/2019/running-minnow/. But where is the data of `transcript.fasta,t2g.tsv,quants_mat.csv,quants_mat_rows.txt,quants_mat_cols.txt` ? Thanks in advance for great help! Best, Yue ...
rna-seq written 2 days ago by yueli7 • 110
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Answer: A: no matrix.mtx.gz in cellranger output
... I ran it again, and I found the `matrix.mtx.gz` is in the folder `run_count_1kpbmcs/outs/filtered_feature_bc_matrix`. Last time, I unzip the file of `run_count_1kpbmcs.mri.tgz`. So I can not found the file in `run_count_1kpbmcs.mri.tgz`. ...
written 3 days ago by yueli7 • 110
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no matrix.mtx.gz in cellranger output
... Hello, I followed link to run cellranger count https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ct It said in the folder `filtered_feature_bc_matrix `should have three files, I have `barcodes.tsv.gz`, `features.tsv.gz`, but I do not have `matr ...
rna-seq written 4 days ago by yueli7 • 110
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Comment: C: Filezilla to dowload fastqc
... Hello. jared.andrews07, Thank you so much for your great help! Thank you again! Best, Yue ...
written 9 days ago by yueli7 • 110
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(Closed) No bcl2fastq found on path
... Hello, I tried to use cellranger mkfastq. It said: > No bcl2fastq found on path. Thanks in advance for great help! Best, Yue li@li-HP-Pavilion-Desktop-590-p0xxx:~/opt/cellranger-3.1.0/cellranger-cs/3.1.0/bin$ bcl2fastq --version BCL to FASTQ file converter bcl2fastq v2.20.0.42 ...
bcl2fastq rna-seq written 9 days ago by yueli7 • 110 • updated 9 days ago by zx8754 ♦ 9.0k
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Comment: C: Filezilla to dowload fastqc
... Hello, jared.andrews07, Thank you so much for your replying! So my question is: where I can see these files? The QC(quality control) of `SRR7722937_S1_L001_R1_001_fastqc.html`. Thank you again! Best, Yue ...
written 9 days ago by yueli7 • 110
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Comment: C: Filezilla to dowload fastqc
... Hello, arup, Thank you so much for your replying! How can I find the target server? I already installed filezilla in my ubuntu sytem. I just want to see the QC (quality control) of `SRR7722937_S1_L001_R1_001_fastqc.html`. Thank you again! Best, Yue ...
written 9 days ago by yueli7 • 110
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Comment: C: Filezilla to dowload fastqc
... Hello, User000, Thank you so much for your replying! I do not have a hostname, password and post. I already installed filezilla in my ubuntu sytem. I just want to see the QC (quality control) of `SRR7722937_S1_L001_R1_001_fastqc.html`. Thank you again! Best, Yue ...
written 9 days ago by yueli7 • 110
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Comment: C: Filezilla to dowload fastqc
... Hello, genomax, Thank you so much for your replying. I already installed filezilla in my ubuntu sytem. I just want to see the QC (quality control) of `SRR7722937_S1_L001_R1_001_fastqc.html`. Thank you again! Best, Yue ...
written 9 days ago by yueli7 • 110
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Filezilla to dowload fastqc
... Hello, I have already installed Filezilla in Ubuntu system. How I can use Filezilla to download `SRR7722937_S1_L001_R1_001_fastqc.html`? I want to see the QC of that fastq file. Thanks in advance for great help! Best, Yue ...
rna-seq written 10 days ago by yueli7 • 110

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Scholar 3 days ago, created an answer that has been accepted. For A: software to draw the picture
Popular Question 6 weeks ago, created a question with more than 1,000 views. For dependency plyr in R 2.15.1
Popular Question 9 weeks ago, created a question with more than 1,000 views. For dependency plyr in R 2.15.1
Scholar 9 weeks ago, created an answer that has been accepted. For A: software to draw the picture
Scholar 10 weeks ago, created an answer that has been accepted. For A: software to draw the picture
Scholar 10 weeks ago, created an answer that has been accepted. For A: mat2csv matrix to csv
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Scholar 12 weeks ago, created an answer that has been accepted. For A: software to draw the picture
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Popular Question 6 months ago, created a question with more than 1,000 views. For dependency plyr in R 2.15.1
Scholar 6 months ago, created an answer that has been accepted. For A: software to draw the picture
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Popular Question 17 months ago, created a question with more than 1,000 views. For DESeq pvalue>0.05 qvalue=1
Popular Question 17 months ago, created a question with more than 1,000 views. For dependency plyr in R 2.15.1
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