User: yueli7
yueli7 • 190
- Reputation:
- 190
- Status:
- Trusted
- Location:
- China
- Last seen:
- 2 weeks, 6 days ago
- Joined:
- 5 years, 6 months ago
- Email:
- y*****@126.com
Posts by yueli7
<prev
• 277 results •
page 1 of 28 •
next >
0
votes
0
answers
149
views
0
answers
... Hello Kevin Blighe,
Thank you so much for your suggestion!
Thank you!
Best,
Yue ...
written 29 days ago by
yueli7 • 190
1
vote
0
answers
149
views
0
answers
... Hello,
I have SILAC protein data which comes from three different days and want to remove batch effect of these data,
1. `knn` function of `impute` package to impute missing expression values.
2. `na.omit` to delete all the NA value.
None of them is work.
Are there any methods that can remov ...
written 4 weeks ago by
yueli7 • 190
0
votes
0
answers
312
views
0
answers
... @brunobsouzaa
Hello brunobsouzaa,
Thank you so much for your comments!
I think the error is the `x Column PEP doesn't exist.` Is that correct?
It is very strange to me that it works well on demo data, but not work well on my own data.
Thank you in advance for your great help!
Best,
Yue
...
written 7 weeks ago by
yueli7 • 190
3
votes
0
answers
312
views
0
answers
... Hello,
I worked on R environment of `parsemsf` package. I have no idea of this error.
Thank you in advance for your great help!
Best,
Yue
>library(parsemsf)
>area_table <- make_area_table("LD-CS-150113_OstromR_OR_AC2_enriched.msf")
Error: Can't subset columns that don't ...
written 7 weeks ago by
yueli7 • 190
• updated
7 weeks ago by
brunobsouzaa • 490
0
votes
0
answers
215
views
0
answers
... Hello _r_am,
Thank yo so much for your comments!
Thank you again!
Best,
Yue
> ggplot2::ggsave(filename="protein.pdf", plot=pep_plot)
Saving 7 x 7 in image
> ggplot2::ggsave(filename="protein.png", plot=pep_plot)
Saving 7 x 7 in image
...
written 7 weeks ago by
yueli7 • 190
0
votes
0
answers
719
views
0
answers
... Hello e.rempel,
Thank you for your comments!
I think It also can work on `R version 3.6.3, dplyr_0.8.2 , dbplyr_1.3.0` .
Thank you again!
> library(parsemsf)
> area_table <- make_area_table(parsemsf_example("test_db.msf"))
> knitr::kable(head(area_table))
| pept ...
written 7 weeks ago by
yueli7 • 190
0
votes
0
answers
215
views
0
answers
... Hello _r_am,
Thank you so much for your great help!
Thank you again and really apprectiated!
Best,
Yue
I tried to use `ggsave` to save the plot.
> pep_plot <- ggplot(peptide_summary,
+ aes(x = start, xend = end, y = spectral_count, yend = spectral_count)) +
+ geom_se ...
written 7 weeks ago by
yueli7 • 190
2
votes
0
answers
215
views
0
answers
... Hello,
I tired to use `ggplot`.
I think there is something wrong with the font, but I have no idea.
Thank you in advance for great help!
Best,
Yue
> pep_plot <- ggplot(peptide_summary,
+ aes(x = start, xend = end, y = spectral_count, yend = spectral_count)) +
+ geom ...
written 7 weeks ago by
yueli7 • 190
2
votes
0
answers
719
views
0
answers
...
R version 3.6.1, dplyr_0.8.2, parsemsf_0.1.1, dbplyr_1.3.0
> library(parsemsf)
> area_table <- make_area_table(parsemsf_example("test_db.msf"))
> knitr::kable(head(area_table))
| peptide_id| spectrum_id|protein_desc |sequence | area| mass| m ...
written 7 weeks ago by
yueli7 • 190
2
votes
0
answers
719
views
0
answers
... Hello,
I tried to use R package of `parsemsf`.
I have no idea of this kinds of error.
Thank you in advance for your great help!
Best,
Yue
```
> library(parsemsf)
> area_table <- make_area_table(parsemsf_example("test_db.msf"))
Error in UseMethod("select_") :
no appli ...
Latest awards to yueli7
Popular Question
22 days ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
5 weeks ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
6 weeks ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
4 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
4 months ago,
created a question with more than 1,000 views.
For DESeq pvalue>0.05 qvalue=1
Voter
4 months ago,
voted more than 100 times.
Popular Question
7 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
7 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
8 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
9 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
10 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Scholar
10 months ago,
created an answer that has been accepted.
For A: software to draw the picture
Scholar
11 months ago,
created an answer that has been accepted.
For A: software to draw the picture
Popular Question
12 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Popular Question
13 months ago,
created a question with more than 1,000 views.
For dependency plyr in R 2.15.1
Scholar
13 months ago,
created an answer that has been accepted.
For A: software to draw the picture
Scholar
13 months ago,
created an answer that has been accepted.
For A: software to draw the picture
Scholar
14 months ago,
created an answer that has been accepted.
For A: software to draw the picture
Scholar
14 months ago,
created an answer that has been accepted.
For A: software to draw the picture
Centurion
14 months ago,
created 100 posts.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1829 users visited in the last hour