User: agata88
agata88 • 790
- Reputation:
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- http://bioidea.com.pl/en
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- Joined:
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Posts by agata88
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... I know how to do it in multiple steps, I am wondering if there is a ready-to-go tool. Best, Agata ...
written 4 days ago by
agata88 • 790
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... Well, I am not asking about simple SNP identification but about whole multiple genome comparison for marker identification. Sorry if I didn't make it clear. Best, Agata ...
written 4 days ago by
agata88 • 790
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... Hi all!
Do you know any tool that can compare multiple genomes and define differences between them (genetic variants) and cluster them according to close identity?
Many thanks to any help,
Best,
Agata ...
written 4 days ago by
agata88 • 790
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Comment:
C: Qiime2 - make table.gza
... Hi, I was, but somehow I missed it. Thanks a lot! Best, Agata ...
written 8 weeks ago by
agata88 • 790
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... Hi all!
I am new with Qiime2 and any kind of help would be much appreciated.
I have abundance results for every taxonomy (phylum - genus) in Excell format. I would like to perform alpha and beta diversity with Qiime2. How can I convert data into table.gza file?
Many thanks to any suggestions.
...
written 8 weeks ago by
agata88 • 790
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... I am also running R version 3.6.0 and Gviz 1.28.0, so I don't know why this is not working for me...
For second question, thank you for tips! I will dig a little more. Best, Agata ...
written 3 months ago by
agata88 • 790
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... Hi all!
I am having trouble with Gvis library and plotTracks function. Here is my code:
ideogram <- IdeogramTrack(chromosome = "chr4",genome="hg38")
axis <- GenomeAxisTrack()
plotTracks(list(ideogram, axis),from=189233986,to=189234447)
Unfortunately, it is not plotting anything. ...
written 3 months ago by
agata88 • 790
• updated
3 months ago by
benformatics • 1.2k
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... Hi all!
I am looking for free for academics tool for compound management. Something similar to Mosaic compound management software. I've found MScreen, but it seems to be outdated - I've found only publication.
Any suggestions?
Best,
Agata ...
written 5 months ago by
agata88 • 790
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... Write in terminal:
git clone https://github.com/GATB/minia.git
git clone https://github.com/jts/sga.git
Then go to cloned directories and follow installation instructions. ...
written 5 months ago by
agata88 • 790
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... How about ClustalO? - https://www.ebi.ac.uk/Tools/msa/clustalo/ ...
written 5 months ago by
agata88 • 790
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