User: agata88

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agata88440
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Poland
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20 hours ago
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1 year, 7 months ago
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Posts by agata88

<prev • 203 results • page 1 of 21 • next >
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Comment: C: How to use qiime group_significance.py script?
... This looks good ... I think I am going to use that first, thank you :) ...
written 3 days ago by agata88440
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Comment: C: How to use qiime group_significance.py script?
... I don't think this will help ... especially when I need to compare eg 35 vs 15 samples. I think I need to use group_significance.py script with specified mapping file. I just don't know if I need to check data for normal distribution. Can I assume that all data is not normally distributed? (because ...
written 3 days ago by agata88440
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Comment: C: PDB files: Valence error
... It looks like your structure has extra connections coming from O and C in defined positions which is not correct. Best, Agata ...
written 3 days ago by agata88440
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Comment: C: PDB files: Valence error
... I am not specialist in PDB sanitization (not sure what it is), but the first thing that I saw was those valence values..5 for C and 3 for O? I think it should be 2 or 4 for C and 2 for O ... and the error tells you that ... Best, Agata ...
written 3 days ago by agata88440
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How to use qiime group_significance.py script?
... Hi all! I know that maybe this is not a question for this forum but I will be glad if somebody could give me an advice in that. I would like to compare bacteria abundances (otu_table.biom, qiime) for two groups of samples: * 35 samples with disease * 15 controls I am not sure which test from gr ...
qiime written 3 days ago by agata88440
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Comment: C: Consensus secondary RNA stractures
... Do you has it as sequences? If so, you can perform aligment (ClustalO) and then use one form this post: https://www.biostars.org/p/77762/ Best, Agata ...
written 5 days ago by agata88440
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Comment: C: Searching for databases and repositories for AML rna seq data
... Are you looking for raw fastq files? Seems that SRA NCBI database have it. https://www.ncbi.nlm.nih.gov/sra/?term=AML Best, Agata ...
written 10 days ago by agata88440
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Comment: C: Convert bed12 to GFF
... Could you paste your BED file? ...
written 10 days ago by agata88440
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Comment: C: Using trimmomatic on multiple paired-end read files
... Please replace 'plikR2' to 'fileR2'. ...
written 10 days ago by agata88440
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Comment: C: Convert bed12 to GFF
... https://www.biostars.org/p/228636/ http://www.raetschlab.org/suppl/gff-tools Best, Agata ...
written 11 days ago by agata88440

Latest awards to agata88

Popular Question 14 days ago, created a question with more than 1,000 views. For normalization of NGS results
Supporter 5 months ago, voted at least 25 times.
Centurion 6 months ago, created 100 posts.
Scholar 9 months ago, created an answer that has been accepted. For A: Idenity, e value or bitscore ?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Idenity, e value or bitscore ?
Scholar 10 months ago, created an answer that has been accepted. For A: Idenity, e value or bitscore ?

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