User: agata88

gravatar for agata88
agata88790
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Poland
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http://bioidea.com.pl/en
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12 hours ago
Joined:
4 years, 3 months ago
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Posts by agata88

<prev • 354 results • page 1 of 36 • next >
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Comment: C: Multiple genome comparison for new genetic markers
... I know how to do it in multiple steps, I am wondering if there is a ready-to-go tool. Best, Agata ...
written 4 days ago by agata88790
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Comment: C: Multiple genome comparison for new genetic markers
... Well, I am not asking about simple SNP identification but about whole multiple genome comparison for marker identification. Sorry if I didn't make it clear. Best, Agata ...
written 4 days ago by agata88790
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Multiple genome comparison for new genetic markers
... Hi all! Do you know any tool that can compare multiple genomes and define differences between them (genetic variants) and cluster them according to close identity? Many thanks to any help, Best, Agata ...
markers written 4 days ago by agata88790
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Comment: C: Qiime2 - make table.gza
... Hi, I was, but somehow I missed it. Thanks a lot! Best, Agata ...
written 8 weeks ago by agata88790
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Qiime2 - make table.gza
... Hi all! I am new with Qiime2 and any kind of help would be much appreciated. I have abundance results for every taxonomy (phylum - genus) in Excell format. I would like to perform alpha and beta diversity with Qiime2. How can I convert data into table.gza file? Many thanks to any suggestions. ...
qiime2 written 8 weeks ago by agata88790
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Comment: C: plotTracks - empty plot and custom genomes
... I am also running R version 3.6.0 and Gviz 1.28.0, so I don't know why this is not working for me... For second question, thank you for tips! I will dig a little more. Best, Agata ...
written 3 months ago by agata88790
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plotTracks - empty plot and custom genomes
... Hi all! I am having trouble with Gvis library and plotTracks function. Here is my code: ideogram <- IdeogramTrack(chromosome = "chr4",genome="hg38") axis <- GenomeAxisTrack() plotTracks(list(ideogram, axis),from=189233986,to=189234447) Unfortunately, it is not plotting anything. ...
R gviz written 3 months ago by agata88790 • updated 3 months ago by benformatics1.2k
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What tool for compound management?
... Hi all! I am looking for free for academics tool for compound management. Something similar to Mosaic compound management software. I've found MScreen, but it seems to be outdated - I've found only publication. Any suggestions? Best, Agata ...
compound drugs management written 5 months ago by agata88790
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Answer: A: How to use GitHub to install assemblers?
... Write in terminal: git clone https://github.com/GATB/minia.git git clone https://github.com/jts/sga.git Then go to cloned directories and follow installation instructions. ...
written 5 months ago by agata88790
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Comment: A: Orthology and Pylogenetic Analysis
... How about ClustalO? - https://www.ebi.ac.uk/Tools/msa/clustalo/ ...
written 5 months ago by agata88790

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Popular Question 5 weeks ago, created a question with more than 1,000 views. For Trimming of 16S reads
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