User: agata88

gravatar for agata88
agata88610
Reputation:
610
Status:
Trusted
Location:
Poland
Website:
http://bioidea.com.pl/en
Last seen:
20 hours ago
Joined:
2 years, 3 months ago
Email:
a***************@o2.pl

Posts by agata88

<prev • 267 results • page 1 of 27 • next >
0
votes
0
answers
106
views
0
answers
How reads are divided into taxonomy level in Qiime?
... Hi all! I was testing assign_taxonomy.py and summarized_taxa.py scripts for my own reference from NCBI. My reference was created as GreenGenes reference (fasta and taxonomy file), except that mine contains only species taxonomy (full 16S gene). Since I've made it compatible with qiime I observed ...
16s qiime written 1 day ago by agata88610 • updated 1 day ago by kennethcondon2007840
0
votes
0
answers
118
views
0
answers
Comment: C: Good quality mock community?
... Thanks, but I am not sure if there are fastq files? for example for HM-782D mock community. I am looking for fastq R1/R2 reference which will include exactly 20 species - not stored fastq file of published data (which is very often deficient) ...
written 9 days ago by agata88610
0
votes
0
answers
118
views
0
answers
Good quality mock community?
... Hi all! Do you know any source of good quality fastq reads (MiSeq, HiSeq) of Mock Community with expected taxonomy? I was working with mokrobiota but the fastq reads have very low quality and it is not possible to compare results. Any help will be much appreciated, Best, Agata ...
16s mock written 9 days ago by agata88610
0
votes
2
answers
844
views
2
answers
Comment: C: Bioidea - open on taking on jobs
... A new post came out on Biodea Facebook page - Cell reprogramming as a breakthrough in healing wounds! - check out here: https://web.facebook.com/bioidea.bioinformatics/ Best, Agata ...
written 9 weeks ago by agata88610
0
votes
1
answer
227
views
1
answers
Answer: A: Filtering by specific genotype VCF
... Hi! I found post in biostar that might be helpful. https://www.biostars.org/p/216441/ To be curious, why do you have hetero variants if your organism is haploid? Best, Agata ...
written 10 weeks ago by agata88610
0
votes
2
answers
844
views
2
answers
Answer: A: Bioidea - open on taking on jobs
... Hi all! Feel welcome to visit our Facebook page of Bioidea - https://web.facebook.com/bioidea.bioinformatics/ This page is going to be used to inform you about the developments and the most interesting achievements connected with the world of genetics, microbiology and related sciences, with Next- ...
written 11 weeks ago by agata88610
1
vote
2
answers
347
views
2
answers
Comment: C: Where can I find a list of pathogens and disease?
... Thank you very much for instruction to find this information :). I was searching PATRIC database before but I could not find it, so thanks!, Best, Agata ...
written 12 weeks ago by agata88610
0
votes
2
answers
347
views
2
answers
Comment: C: Where can I find a list of pathogens and disease?
... I was thinking more about a database with pathogen bacteria species (e.g.. from NCBI) and related disease confirmed in publications. Do you know a database like that? I heard about PATRIC database but I cannot find those information there. ...
written 12 weeks ago by agata88610
5
votes
2
answers
347
views
5 follow
2
answers
Where can I find a list of pathogens and disease?
... Hi all! Do you know a database where I can find bacteria pathogens with correlated disease? Many thanks for help, Best, Agata ...
bacteria pathogen written 12 weeks ago by agata88610 • updated 12 weeks ago by a.zielezinski7.4k
0
votes
0
answers
187
views
0
answers
Comment: C: Metagenome 16S reference
... hmm, yes indeed. I was using Silva124 version not the one you have used. I am gonna go with 128 version. Thanks. ...
written 3 months ago by agata88610

Latest awards to agata88

Popular Question 8 months ago, created a question with more than 1,000 views. For normalization of NGS results
Supporter 13 months ago, voted at least 25 times.
Centurion 13 months ago, created 100 posts.
Scholar 16 months ago, created an answer that has been accepted. For A: Idenity, e value or bitscore ?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Idenity, e value or bitscore ?
Scholar 18 months ago, created an answer that has been accepted. For A: Idenity, e value or bitscore ?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 491 users visited in the last hour