User: Free Man

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Free Man170
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Bioinfomatics...

Posts by Free Man

<prev • 21 results • page 1 of 3 • next >
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How to find the homologous mouse site of human SNP
... Hi, I have a list of human SNP. Is it possible to find the corresponding homologous sites of mouse? Any comments about database,tools, analysis publications and suggestions are welcome! Thanks! ...
homology snp written 4.6 years ago by Free Man170 • updated 4.6 years ago by Biostar ♦♦ 20
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Answer: A: David Pathway Analysis
... Are you using DAVID: Functional Annotation Tool? DAVID does provided the information about the pathway size and the overlap between background. Please use "Functional Annotation Chart" to view the results. And use "Options" to customize the results which do not show the pathway size and the overlap ...
written 5.4 years ago by Free Man170
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How To Perform Peptide-Protein Docking
... Hi, could anybody give me an example about how to perform peptide-protein docking: the software and steps? Here is my problem: (1) a peptide about 10 amino acids (2) target protein (an enzyme with known PDB structure file, and known active sites) (3) how to find the most reliable binding site and t ...
molecular docking written 5.4 years ago by Free Man170 • updated 2.1 years ago by Petr Ponomarenko2.6k
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Answer: A: Problem: Mapping Of Ensemble Gene Ids With Uniprot Accession Ids By Using Unipro
... Gene IDs and PROTEIN IDs are different. Generally, a GENE ID can be mapped to many PROTEIN IDs due to alternative splicing. See the review: One Gene, Many Proteins for detail. Thus, you may firstly filter corresponding ENSEMBL PROTEIN IDs. ...
written 5.6 years ago by Free Man170
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Answer: A: Drug And Pediatrics
... You may combine DrugBank and the information of FDA (U.S. Food and Drug Administration). Just begin from drug search . FDA also provided drug safety information and guide for pediatric safety. ...
written 5.6 years ago by Free Man170
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Comment: C: How To Use Blast To Find Exact Matches Of Short Sequences?
... Thanks for you suggestion! After tedious attempts using various parameters, I got the solution for my project: Key parameters: -comp_based_stats 0 -ungapped -matrix PAM 30 -seg no ...
written 5.6 years ago by Free Man170
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Comment: C: How To Use Blast To Find Exact Matches Of Short Sequences?
... Hi, I got error: "Error: (CArgException::eInvalidArg) Unknown argument: "perc_identity"". I did not find something like 'perc_identity' in the help doc for tblastn. It seems it is only avaliable for blastn. So what version are you using? ...
written 5.6 years ago by Free Man170
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How To Use Blast To Find Exact Matches Of Short Sequences?
... Hi, I am using tblastn (under blast 2.2.25+) for exact peptide mapping (no gaps). I want to map few peptides (about 6 to 50 AAs in length) to genome. However, as I test a known peptide of 6 AAs,tblastn failed to mapped this peptide. I have read the doc of blast, but failed to find a solution. What ...
blast written 5.6 years ago by Free Man170 • updated 5.6 years ago by SRKR170
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The Relationship Between Protein Abundance And Protein Function
... Hi, I got a list of proteins with quantification information. And I want to analyze the relationship between protein abundance and protein function. It seems that lowly expressed proteins have significant regulative functions while highly expressed proteins are just components or functionally unkn ...
function protein written 6.0 years ago by Free Man170 • updated 6.0 years ago by Aldo60
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Answer: A: About Human Protein Coding Gene Copy Number Across Genome
... I just found that: http://dgd.genouest.org/ provides duplicated genes by groups. http://goods.ibms.sinica.edu.tw/DNVs/download.html identifies over 10% of human genes associated with duplicated gene loci (DGL). ...
written 6.4 years ago by Free Man170

Latest awards to Free Man

Supporter 5.2 years ago, voted at least 25 times.
Student 6.0 years ago, asked a question with at least 3 up-votes. For The Relationship Between Protein Abundance And Protein Function
Popular Question 7.8 years ago, created a question with more than 1,000 views. For What Is The Definition Of Gene Cluster

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