User: Fabio Marroni

gravatar for Fabio Marroni
Fabio Marroni2.0k
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Italy
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http://www.fabiomarron...
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Last seen:
15 hours ago
Joined:
7 years, 6 months ago
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Posts by Fabio Marroni

<prev • 319 results • page 1 of 32 • next >
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Comment: C: How to check breakpoint after detecting a CNV.
... I am afraid I assumed a too simple situation. Your case is more complex and would need different approaches (maybe long reads?), but my answer is NOT applicable to your case (should I delete it?) ...
written 5 days ago by Fabio Marroni2.0k
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Comment: C: How to check breakpoint after detecting a CNV.
... I agree with you, I assumed a too simplistic situation. ...
written 5 days ago by Fabio Marroni2.0k
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Answer: A: How to check breakpoint after detecting a CNV.
... I assume that by CNV you mean a sequence of DNA that is present in 2 copies in some subjects and in 1 or 0 copies in other (i.e. a deletion). If by CNV you mean a portion of DNA that is present in multiple copies then the situation is more complex. This said, you might design a primer pair on the bo ...
written 6 days ago by Fabio Marroni2.0k
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Answer: A: primers for whole metagenome
... I am sorry for this shameful self-promotion, but you can give a look at the methods section of our recent [paper][1] (actually still waiting for reviewers!) in which the library preparation for WGS is explained. However, I agree with @gb that being shotgun sequencing by definition you must avoid u ...
written 9 days ago by Fabio Marroni2.0k
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Comment: C: How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be re
... I suggest you provide some more details: Is the .meta file a text file? Pasting the first few lines of the .meta file might increase your chances of getting an answer. ...
written 10 days ago by Fabio Marroni2.0k
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Comment: C: TopGO Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
... Note that topGO expects that what you called geneNames is a large set, which comprises several genes, including those present in geneList_1. In your case looks like the two objects are totally different, that's why topGO doesn't work. Maybe you can look to [this][1] thread (which was related to anto ...
written 10 days ago by Fabio Marroni2.0k
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Comment: C: dN/dS ratio from .vcf file
... You might try [SNPgenie][1] [1]: https://github.com/chasewnelson/SNPGenie ...
written 20 days ago by Fabio Marroni2.0k
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Answer: A: genomic inflation factor and how to use it to estimate adjusted P-values in GWAS
... 1) The number of df is 1 because in the original work Devlin and Roeder ([Biometrics, 1999][1]) observed that the best estimator of lambda is obtained by dividing the median of the test statistics by 0.675^2 which incidentally is 0.455 which is the median of the chi-square distribution with one degr ...
written 29 days ago by Fabio Marroni2.0k
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Answer: C: Heritability Atlas Based on Twins Study
... They have a population-based sample, so I think they do not have twin-based heritability. If you need twin data you might look for twin-based registries such as [this one][1]. [1]: http://www.twinsuk.ac.uk/ ...
written 29 days ago by Fabio Marroni2.0k
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Comment: C: Heritability Atlas Based on Twins Study
... There are two sets of data: The file [ukbb_all_h2part_results.txt.gz][1] gives an error 415, but I was able to download the file [ukbb_all_h2univar_results.txt.gz][2]. I don't know the difference between the two. You might contact the maintainers regarding the first file. [1]: https://www.drop ...
written 4 weeks ago by Fabio Marroni2.0k

Latest awards to Fabio Marroni

Teacher 22 days ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Scholar 28 days ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: Sample Sam File
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Appreciated 8 months ago, created a post with more than 5 votes. For A: What Is Ivsi Number Of A Mutation?
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Scholar 13 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Appreciated 13 months ago, created a post with more than 5 votes. For A: What Is Ivsi Number Of A Mutation?
Commentator 14 months ago, created a comment with at least 3 up-votes. For C: error in R
Scholar 14 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Scholar 15 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Scholar 16 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Voter 16 months ago, voted more than 100 times.
Scholar 17 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Scholar 2.2 years ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Guru 2.5 years ago, received more than 100 upvotes.
Scholar 2.7 years ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Scholar 2.7 years ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Good Question 2.9 years ago, asked a question that was upvoted at least 5 times. For Bwa-Mem: Discriminate Between Reads Mapping Uniquely And Those Mapping In Multiple Positions

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