User: Fabio Marroni

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Fabio Marroni1.8k
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Posts by Fabio Marroni

<prev • 303 results • page 1 of 31 • next >
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Comment: C: Why my limma DEG result in top Table all without significant meaning,showing log
... How many replicates do you have per condition? Do you see very high variation between replicates? Did you try doing the analysis with a toy data set (probably provided by the package developer) to see if using that you got significant results? Are there additional software packages you may try t ...
written 14 days ago by Fabio Marroni1.8k
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Comment: C: error assembly megahit
... I am sorry... I don't know what to do. For me it works :-( However, try to change the way you feed the read name to megahit. Maybe, if you have a few files, you can start by feeding the names by hand and then when you will have figured out the correct way to feed the names you can use automated scr ...
written 17 days ago by Fabio Marroni1.8k
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Comment: C: error assembly megahit
... Sorry... I don't understand what you mean by "it seems that you do not recognize the key and change it by parentheses, but I have a error" Let's debug step by step: try this and let me know if this gives an error. mkdir test_dir cd test_dir touch sample1_1.fq sample1_2.fq sample2_1. ...
written 17 days ago by Fabio Marroni1.8k
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Comment: C: Indel calling from sanger reads
... When I worked on Sanger sequencing I used [phred/phrap/consed][1] and that was great for finding indels. You might give that a try. [1]: http://www.phrap.org/phredphrapconsed.html ...
written 17 days ago by Fabio Marroni1.8k
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Comment: C: GWAS for ordinal data? Quantitative trait with lots of "zero" values....
... I am not very expert of this, but maybe you can try with the so-called zero-inflated approaches? Like something discussed in this paper: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572011000400008 ...
written 17 days ago by Fabio Marroni1.8k
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Answer: A: error assembly megahit
... You are sending the wrong file names. From the error message I understand that megahit is looking for the file "assembly_sample1_1.fq_1.fq", which doesn't exist Try this: for i in *_1.fq do read1=${i/.fq/} read2=${read1/_1/_2} /home/fernado/megahit/megahit -1 $read1 -2 $read2 ...
written 17 days ago by Fabio Marroni1.8k
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Comment: C: Short Term Bioinformatics Online & Offline Training Program
... Thank you for posting! However, since this is a course/training announcement, I think it should be under News rather than under Jobs. ...
written 27 days ago by Fabio Marroni1.8k
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Comment: C: Bioinformatics workshop or training courses
... As a course organizer, I usually post the courses I organize here on Biostars, under the "News" category. Sadly enough, looks like there is no way to only view results belonging to the "News" category as is possible, e.g. for "Jobs" or "Tools". Thus I have no better suggestion than to perform a clas ...
written 6 weeks ago by Fabio Marroni1.8k
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News: Course "Epigenetics: on the top of genetics", Udine, Italy, 4-7 September 2018
... ![enter image description here][1] We are happy to accept registrations for this practical course on the analysis of NGS data related to epigenetics. The main topcis that will be covered are: analysis of bisulfite sequencing (BS-seq) data, analysis of ChIP-seq data, analysis of small RNAs, analysis ...
hi-c news chip-seq smallrna bs-seq ngs written 6 weeks ago by Fabio Marroni1.8k
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Comment: C: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
... Great suggestion! I will try to make good use of it! However, I have to confess that in origin I named the three days "Welcome to the Jungle", "Patience" and "Paradise City", respectively. ...
written 3 months ago by Fabio Marroni1.8k

Latest awards to Fabio Marroni

Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Appreciated 5 months ago, created a post with more than 5 votes. For A: What Is Ivsi Number Of A Mutation?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Scholar 10 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Appreciated 11 months ago, created a post with more than 5 votes. For A: What Is Ivsi Number Of A Mutation?
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: error in R
Scholar 12 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Scholar 12 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Scholar 13 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
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Scholar 14 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Scholar 23 months ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Guru 2.2 years ago, received more than 100 upvotes.
Scholar 2.5 years ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Scholar 2.5 years ago, created an answer that has been accepted. For A: what does Num_Probes in a segmentation file refer to?
Good Question 2.6 years ago, asked a question that was upvoted at least 5 times. For Bwa-Mem: Discriminate Between Reads Mapping Uniquely And Those Mapping In Multiple Positions
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Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: What Is Ivsi Number Of A Mutation?
Commentator 3.2 years ago, created a comment with at least 3 up-votes. For C: How Large Can A Coverage Discrepancy Be Between Two Aligners, Specifically Bwa A

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