User: m.fletcher

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m.fletcher20
Reputation:
20
Status:
New User
Location:
Germany
Last seen:
1 year, 8 months ago
Joined:
3 years, 4 months ago
Email:
m*********@dkfz-heidelberg.de

Posts by m.fletcher

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Randomising row order in a subset of columns of a gene expression matrix (R)
... Ah, yes, the `strata` option looks like it could possibly do the job - although from my reading of the manpage, it looks like that the permutations still occur within each specified stratum; whereas I want to permute the data within only one of those strata. Thank you for the suggestion, I will try ...
written 20 months ago by m.fletcher20
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Randomising row order in a subset of columns of a gene expression matrix (R)
... Hello all, I'm using R to investigate gene co-expression modules in a dataset and I would like to generate some 'noise' in the matrix, and then re-computing the co-expression modules using this noisy matrix. This would give me an idea of the robustness of the modules. (In this case we have rows = ...
R written 21 months ago by m.fletcher20
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Comment: C: Filtering de novo transcriptomes - finding transcripts present in N samples
... Thanks, I will definitely try that approach out also! ...
written 3.4 years ago by m.fletcher20
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Comment: C: Bedtools Compare Multiple Bed Files?
... Is multiinter strand-aware? The output doesn't give any clues whether it is!   ...
written 3.4 years ago by m.fletcher20
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Filtering de novo transcriptomes - finding transcripts present in N samples
... Gidday, I've been running de novo transcriptome assembly on a large set of RNA-seq data (n=48 samples). I'd like to combine the per-sample assemblies into a meta-assembly (representing potential novel transcripts present in the entire sample set) that I can use for downstream analyses. Due to the ...
assembly rna-seq written 3.4 years ago by m.fletcher20 • updated 2.6 years ago by Biogeek320

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