User: Teresa

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Teresa0
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Posts by Teresa

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Comment: A: michigan imputation server
... I would like to work with dosage genotypes rather than hard call genotypes. It is really difficult for me to find a way to obtain a final data with dosage genotypes (calculated in the imputation process performed by Michigan imputation server) and at the same time taking into account QC steps pe- ma ...
written 9 months ago by Teresa0
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Answer: A: How can I analyze the data provided by Michigan Imputation server using ProbABEL
... I have the same questions. Have you solved them? ...
written 9 months ago by Teresa0
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Answer: A: fcGENE conversion error: Plink dosage to bed/bim/fam
... I have the same problem. Have you solved it? ...
written 9 months ago by Teresa0
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michigan imputation server
... Hi, I performed imputation on my GWAS data using Michigan imputation server. Now I have two output files: 1).dose.vcf.gz and 2).info.gz Michigan imputation server use mimimac3 (--format GT,DS,GP) and in the output file ".dose.vcf.gz" are present all the three formats. I'm new on this kind of analy ...
conversion michigan imputation server written 9 months ago by Teresa0
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phase genotype data (infer haplotypes) for multiple families
... Hi eveyone, could you please suggest me some software to phase genotype data for multiple families (no trios). Beagle can do this kind of analysis? Thans ...
software haplotype family data phasing beagle written 3.4 years ago by Teresa0 • updated 3.2 years ago by Biostar ♦♦ 20
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Answer: A: HLA allele from RNA and DNA-seq
... Thanks for your kind reply     ...
written 3.4 years ago by Teresa0
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HLA allele from RNA and DNA-seq
... Hi everyone, can you please suggest me some software for HLA imputation from DNA and RNA-seq.   Thanks ...
imputattion dna-seq hla rna-seq written 3.4 years ago by Teresa0 • updated 3.4 years ago by Alvaro Sebastian70

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Popular Question 9 months ago, created a question with more than 1,000 views. For HLA allele from RNA and DNA-seq

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