User: eric.kern13
eric.kern13 • 100
- Reputation:
- 100
- Status:
- Trusted
- Location:
- United States
- Last seen:
- 1 week ago
- Joined:
- 3 years ago
- Email:
- e**********@gmail.com
Posts by eric.kern13
<prev
• 36 results •
page 1 of 4 •
next >
0
votes
4
answers
4.3k
views
4
answers
... Using the ncbi UNIVEC reference or similar, you can do a BLAST search against common artificial sequences.
https://www.ncbi.nlm.nih.gov/tools/vecscreen/univec/ ...
written 21 days ago by
eric.kern13 • 100
0
votes
1
answer
512
views
1
answers
... What have you tried so far? One sensible solution might be to try:
- whatever you would try if you didn't have to worry about low counts; maybe K-means
- some out-of-the-box method such as PAGODA. http://hms-dbmi.github.io/scde/pagoda.html
If those don't get you to where you need to be, then where ...
written 6 months ago by
eric.kern13 • 100
0
votes
1
answer
1.7k
views
1
answers
Comment:
C: Question about dbSNP rs #s
... Do you know of an easy way to update rsid's that have been retired? ...
written 9 months ago by
eric.kern13 • 100
0
votes
1
answer
14k
views
1
answers
... (I would like to hear the answer to this as well.) ...
written 12 months ago by
eric.kern13 • 100
0
votes
5
answers
24k
views
5
answers
... This is an interesting comment and I'd like to understand it better. Are you using the word "regularization" in the statistical sense, for example as in "Tikhonov regularization"? If so, can you describe the statistical methods you have in mind? Also, how do you know that there are more duplicates p ...
written 12 months ago by
eric.kern13 • 100
0
votes
1
answer
440
views
1
answer
... Suppose I have the following read:
AAGGAAGGAAGGAAGGACTTCCTT
I want to align it to one of these two reference sequences:
AAGGAAGGAAGGAAGGACAAGGAA
AAGGAAGGAAGGAAGGCCTTCCTT
Clearly, the second reference sequence is where the read belongs: there's only one mismatch. The maximum mappable ...
written 14 months ago by
eric.kern13 • 100
• updated
14 months ago by
Santosh Anand • 3.8k
0
votes
1
answer
542
views
1
answers
... Works like a charm. Thank you very much! ...
written 15 months ago by
eric.kern13 • 100
0
votes
1
answer
542
views
1
answers
... I tried to; it didn't work. I'll try again. ...
written 15 months ago by
eric.kern13 • 100
2
votes
1
answer
542
views
1
answer
... I want to retrieve all genes corresponding to a given mammalian phenotype ontology term (for example, MP:0005375), preferably within R. Are there tools to do this? Can I do it within BioMart? Or is the best bet to build something around the APIs [here][1] or [here][2]?
Related: [similar question fo ...
written 15 months ago by
eric.kern13 • 100
• updated
15 months ago by
Mike Smith • 820
0
votes
1
answer
1.2k
views
1
answers
Comment:
C: cell surface receptor genes
... Thanks for this list of resources! ...
written 22 months ago by
eric.kern13 • 100
Latest awards to eric.kern13
Popular Question
21 days ago,
created a question with more than 1,000 views.
For Mappability Scores from bigWigAverageOverBed all zero
Popular Question
4 months ago,
created a question with more than 1,000 views.
For +/- strand conventions for probe sequences
Popular Question
6 months ago,
created a question with more than 1,000 views.
For Pysam cannot find index
Supporter
9 months ago,
voted at least 25 times.
Popular Question
22 months ago,
created a question with more than 1,000 views.
For Pysam cannot find index
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 983 users visited in the last hour