User: akhilvbioinfo

gravatar for akhilvbioinfo
akhilvbioinfo110
Reputation:
110
Status:
Trusted
Location:
India, chennai
Last seen:
1 week, 1 day ago
Joined:
2 years, 3 months ago
Email:
a************@gmail.com

Posts by akhilvbioinfo

<prev • 86 results • page 1 of 9 • next >
1
vote
1
answer
515
views
1
answer
Pan and core Genome prediction from OrthoMCL output
... Hai biostars I did Orthomcl clustering with 7 genome and i got more than 9000 clusters. How will i find Pan,core Genome and unique genes from OrthoMCL output. Is there any scripts or tool for this ? ...
core genome pangenome orthomcl mcl written 10 months ago by akhilvbioinfo110 • updated 10 months ago by jrj.healey2.9k
0
votes
1
answer
399
views
1
answers
Comment: C: SNP frequencies in Fasta Alignment
... Is there any programmes or tool to calculate this ...
written 10 months ago by akhilvbioinfo110
0
votes
1
answer
399
views
1
answers
Comment: C: SNP frequencies in Fasta Alignment
... i aligned 20 genes (fasta format) using MAFFT and i want to find gene variation respect to snp/snp frequencies ...
written 10 months ago by akhilvbioinfo110
0
votes
1
answer
399
views
1
answer
SNP frequencies in Fasta Alignment
... Hai everyone I have a set of fasta aligned file from this alignment file how i will get snps and its frequencies ...
fasta alignment snp written 10 months ago by akhilvbioinfo110 • updated 10 months ago by Fabio Marroni1.5k
0
votes
1
answer
552
views
1
answers
Comment: C: extract same all similar sequences in FASTA based on the header
... I changed headers using this comment ( Seq tool kit wont accept "/" characters) sed -i -e 's/\//\-/g'seqs.fna Now its working perfectly Thank you ...
written 12 months ago by akhilvbioinfo110
0
votes
1
answer
552
views
1
answers
Comment: C: extract same all similar sequences in FASTA based on the header
... its very simple sir but i got an error like this [ERRO] open seqs.fna.split/seqs.id_ketopantoate reductase PanE/ApbA family protein.fna: no such file or directory ...
written 12 months ago by akhilvbioinfo110
0
votes
1
answer
552
views
1
answers
Comment: C: extract same all similar sequences in FASTA based on the header
... awk -F "|" '/^>/ {F = $3".fasta"} {print > F}' input.fasta>out.fasta ...
written 12 months ago by akhilvbioinfo110
0
votes
1
answer
552
views
1
answers
Comment: C: extract same all similar sequences in FASTA based on the header
... Yah i tried with AWK but its not working properly ...
written 12 months ago by akhilvbioinfo110
4
votes
1
answer
552
views
1
answer
extract same all similar sequences in FASTA based on the header
... Hello I downloaded more than 10k cds from NCBI and Headers look like this >lcl|DS180867.1_cds_EDM56551.1_2 [protein=hemolysin] [protein_id=EDM56551.1] [location=complement(<1..1012)] >lcl|DS180866.1_cds_EDM56342.1_3 [protein=phosphogluconate dehydratase] [protein_id=EDM56342.1] [locati ...
fasta sequence alignment written 12 months ago by akhilvbioinfo110 • updated 12 months ago by shenwei3563.4k
0
votes
5
answers
936
views
5
answers
Comment: C: FASTA sequence sorting based on the header
... After changing header into single-line form the code is running perfectly thank you Alex ...
written 12 months ago by akhilvbioinfo110

Latest awards to akhilvbioinfo

Popular Question 28 days ago, created a question with more than 1,000 views. For concatenate sequences in a fasta file
Popular Question 3 months ago, created a question with more than 1,000 views. For concatenate sequences in a fasta file
Popular Question 7 months ago, created a question with more than 1,000 views. For concatenate sequences in a fasta file
Popular Question 8 months ago, created a question with more than 1,000 views. For concatenate sequences in a fasta file
Popular Question 9 months ago, created a question with more than 1,000 views. For How to unzip all genomic.fna.gz in single command
Popular Question 11 months ago, created a question with more than 1,000 views. For nr- protein database
Popular Question 12 months ago, created a question with more than 1,000 views. For how to rearrange fasta file according to its length
Popular Question 14 months ago, created a question with more than 1,000 views. For how to rearrange fasta file according to its length

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1344 users visited in the last hour