User: akhilvbioinfo

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akhilvbioinfo150
Reputation:
150
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Location:
India, chennai
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1 week, 5 days ago
Joined:
4 years, 7 months ago
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Posts by akhilvbioinfo

<prev • 88 results • page 1 of 9 • next >
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Comment: C: how to rearrange fasta file according to its length
... You can sort fasta by using [BBMAP](https://sourceforge.net/projects/bbmap/) example cmd ./sortbyname.sh in=input.fa out=out.fa descending ...
written 6 weeks ago by akhilvbioinfo150 • updated 6 weeks ago by RamRS26k
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Job: Senior Scientific Officer
... SRMIST invites applications for the following position to work in the above mentioned project: Senior Scientific Officer – 1 No. Essential Qualification:M.Sc / M.Tech in Life Sciences with a minimum of 5 years work experience in molecular biology techniques such as qPCR, Bioplex and Microarray. S ...
digitalpcr bioplex job qpcr pcr written 16 months ago by akhilvbioinfo150 • updated 15 months ago by WouterDeCoster43k
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Comment: C: Cannot Install Latest Version Of Deseq
... You can install DESeq via Bioconda using this command conda install bioconductor-deseq2 ...
written 18 months ago by akhilvbioinfo150 • updated 17 months ago by RamRS26k
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Pan and core Genome prediction from OrthoMCL output
... Hai biostars I did Orthomcl clustering with 7 genome and i got more than 9000 clusters. How will i find Pan,core Genome and unique genes from OrthoMCL output. Is there any scripts or tool for this ? ...
core genome pangenome orthomcl mcl written 3.2 years ago by akhilvbioinfo150 • updated 3.2 years ago by Joe16k
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Comment: C: SNP frequencies in Fasta Alignment
... Is there any programmes or tool to calculate this ...
written 3.3 years ago by akhilvbioinfo150
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Comment: C: SNP frequencies in Fasta Alignment
... i aligned 20 genes (fasta format) using MAFFT and i want to find gene variation respect to snp/snp frequencies ...
written 3.3 years ago by akhilvbioinfo150
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SNP frequencies in Fasta Alignment
... Hai everyone I have a set of fasta aligned file from this alignment file how i will get snps and its frequencies ...
fasta alignment snp written 3.3 years ago by akhilvbioinfo150 • updated 3.3 years ago by Fabio Marroni2.5k
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Comment: C: extract same all similar sequences in FASTA based on the header
... I changed headers using this comment ( Seq tool kit wont accept "/" characters) sed -i -e 's/\//\-/g'seqs.fna Now its working perfectly Thank you ...
written 3.3 years ago by akhilvbioinfo150
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Comment: C: extract same all similar sequences in FASTA based on the header
... its very simple sir but i got an error like this [ERRO] open seqs.fna.split/seqs.id_ketopantoate reductase PanE/ApbA family protein.fna: no such file or directory ...
written 3.3 years ago by akhilvbioinfo150
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Comment: C: extract same all similar sequences in FASTA based on the header
... awk -F "|" '/^>/ {F = $3".fasta"} {print > F}' input.fasta>out.fasta ...
written 3.4 years ago by akhilvbioinfo150

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Popular Question 6 weeks ago, created a question with more than 1,000 views. For finding gene variation using Fasta files
Great Question 14 months ago, created a question with more than 5,000 views. For concatenate sequences in a fasta file
Great Question 14 months ago, created a question with more than 5,000 views. For how to rearrange fasta file according to its length
Popular Question 14 months ago, created a question with more than 1,000 views. For finding gene variation using Fasta files
Popular Question 14 months ago, created a question with more than 1,000 views. For concatenate sequences in a fasta file
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Great Question 2.4 years ago, created a question with more than 5,000 views. For nr- protein database
Great Question 2.4 years ago, created a question with more than 5,000 views. For how to rearrange fasta file according to its length
Epic Question 2.4 years ago, created a question with more than 10,000 views. For nr- protein database
Popular Question 2.4 years ago, created a question with more than 1,000 views. For concatenate sequences in a fasta file
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