User: V

gravatar for V
V230
Reputation:
230
Status:
Trusted
Location:
UK/London
Last seen:
1 week, 2 days ago
Joined:
5 years, 2 months ago
Email:
k*******@kcl.ac.uk

Posts by V

<prev • 108 results • page 1 of 11 • next >
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Comment: C: Help with Rstudio in Anaconda Navigator
... It's easier (for me) to keep things organised using a navigator but thanks for sharing your opinion. ...
written 9 days ago by V230
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Answer: A: Help with Rstudio in Anaconda Navigator
... Ok, I've solved it. I'm posting the response here in case anyone runs into similar issues. I changed the directory using the below in Rstudio: .libPaths("location of new directory") ...
written 9 days ago by V230
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Help with Rstudio in Anaconda Navigator
... Hello, I was wondering if someone could help me with an issue im having running R studio through anaconda-navigator (in ubuntu). I've installed RStudio (in anaconda) and everything is working great. When updating packages through the anaconda-navigator environment panel (which should automatical ...
ubuntu anaconda rstudio written 10 days ago by V230
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TF regulatory network reconstruction from single cell
... Hello, Would anyone know any good R packages (besides SCENIC) that are user friendly and integrate well with Seurat that allow you to infer gene regulatory relationships between your scRNAseq clusters? Or if specific TFs seem to be driving a specific clusters identity/function etc? thank you ...
scrnaseq seurat written 11 weeks ago by V230 • updated 11 weeks ago by geek_y11k
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Comment: C: Re-arrange conditions in Seurat
... that's amazing. It did. Thank you :) ...
written 3 months ago by V230
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Comment: C: Re-arrange conditions in Seurat
... I'm not exactly sure I can re-collect from memory. What I believe I did was apply levels to the SeuratObject$data but then even calling simple things like DimPlot did not work. The solution posted below by antonio seems to work but would there be a way to properly apply levels to the seurat object ...
written 3 months ago by V230
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Comment: C: Re-arrange conditions in Seurat
... this seems to solve it, but would you know how this could be done to the Seurat object so it plots it in a specific order by default? ...
written 3 months ago by V230
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Comment: C: Re-arrange conditions in Seurat
... I think it has something to do with how they are ordered in Seurat rather than the way ggplot2 is plotting it. They code I use to generate it is : DimPlot(SeuratObject, split.by = "stim") ...
written 3 months ago by V230
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Re-arrange conditions in Seurat
... Hello, Would anyone know how to re-arrange the output of featureplots/dimplots when using the 'split.by = 'stim'' function? I have 3 conditions, Young, Adult and Old but the output of the featureplot panels is Old, Young, Adult. Tried to re-arrange them using "levels" but ended up breaking the Se ...
rnaseq seurat written 3 months ago by V230 • updated 3 months ago by antonioggsousa1.5k
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Comment: C: Remove ensembl identifiers from Seurat
... Worked like a charm. Thank you :) ...
written 4 months ago by V230

Latest awards to V

Popular Question 11 weeks ago, created a question with more than 1,000 views. For Samtools sam-> Bam
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Seurat heatmap across conditions
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Samtools sort error
Popular Question 3 months ago, created a question with more than 1,000 views. For Samtools sam-> Bam
Centurion 3 months ago, created 100 posts.
Supporter 4 months ago, voted at least 25 times.
Popular Question 8 months ago, created a question with more than 1,000 views. For Ensembl id to Gene name
Scholar 12 months ago, created an answer that has been accepted. For A: How to know does DNA variant sequencing (eg. somatic variant) affect to Protein
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How to know does DNA variant sequencing (eg. somatic variant) affect to Protein
Great Question 21 months ago, created a question with more than 5,000 views. For Ensembl id to Gene name
Great Question 21 months ago, created a question with more than 5,000 views. For Run Samtools on multiple files
Popular Question 21 months ago, created a question with more than 1,000 views. For Ensembl id to Gene name
Popular Question 21 months ago, created a question with more than 1,000 views. For Samtools sam-> Bam
Popular Question 21 months ago, created a question with more than 1,000 views. For Bash Script Loop Help
Popular Question 21 months ago, created a question with more than 1,000 views. For Issues with DiffBind
Great Question 2.3 years ago, created a question with more than 5,000 views. For Ensembl id to Gene name
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Run Samtools on multiple files
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Ensembl id to Gene name
Popular Question 2.3 years ago, created a question with more than 1,000 views. For fastq.gz Error: Not in gzip format
Student 2.3 years ago, asked a question with at least 3 up-votes. For Run mutltiple Fastq files on Hisat2
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Ensembl id to Gene name
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Ensembl id to Gene name
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Run mutltiple Fastq files on Hisat2
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Ensembl id to Gene name
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Ensembl id to Gene name

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