User: manasa22.reddy

Reputation:
40
Status:
New User
Location:
United States
Last seen:
3 months, 2 weeks ago
Joined:
3 years, 9 months ago
Email:
m*************@gmail.com

Posts by manasa22.reddy

<prev • 11 results • page 1 of 2 • next >
1
vote
1
answer
200
views
1
answer
Running RNA mats pipeline using fastq files as input ,unable to generate star index folder
... Hi everyone , Iam trying to understand rmats pipeline for my project.iam trying to run the pipeline with test files. provided in the tutorial . I am successful in running the pipeline using bam files .I have problem running pipeline using fastq files ,I am confused about star index folder , where d ...
tool rna-seq written 3 months ago by manasa22.reddy40 • updated 3 months ago by darbinator180
0
votes
0
answers
400
views
0
answers
msi sensor for microsatellite instability detection
... Hi everyone , I have been working with MSI sensor pipeline, I got the following error - "Same reference genome file should be used in both 'msisensor scan' and 'msisensor msi' steps!!!" I am working on GSE 30833 dataset and specfically using GSE64988 tumor sample.Used hg18 as reference genome as ...
next-gen written 7 months ago by manasa22.reddy40
0
votes
0
answers
532
views
0
answers
using colorspace in d3heatmap
... hi everyone, anyone have an idea about how to use colorspace in d3heatmap.i want to construct a interactive heat map ...
R colorspace heatmaps written 2.5 years ago by manasa22.reddy40
0
votes
1
answer
789
views
1
answers
Comment: C: GO term analysis
... figure no 6 in follwing article https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148957/ ...
written 2.5 years ago by manasa22.reddy40
0
votes
1
answer
789
views
1
answers
Comment: C: GO term analysis
... yeah iam working on venn diagrams ,but i also need to plot a graph which is somewhat like the image i have linked in post. ...
written 2.5 years ago by manasa22.reddy40
0
votes
1
answer
789
views
1
answer
GO term analysis
... ![enter image description here][1]we have done micro array analysis for 3 conditions,we have separated all the deg for all three conditions and we have performed gene set enrichment analysis for deg genes for all three conditions.Now i have 3 files related to 3 conditions with following columns(gene ...
R gene set enrichment analysis microarrray data written 2.5 years ago by manasa22.reddy40 • updated 2.5 years ago by Benn6.9k
0
votes
0
answers
838
views
0
answers
finding overlapping go terms
... I have three set of excel files related to some disorder , with the below columns and i am supposed to find overlapping go terms and then analyse how the go terms overlapped is causing the disorder GO name; Universe set;No. of genes; No. of input genes;No. of overlapping genes ;p-value;Gene IDs; ...
R gene set enrichment analysis written 2.5 years ago by manasa22.reddy40
5
votes
1
answer
1.3k
views
1
answer
ncbi gds datasets
... iam a new user of ncbi geo,so iam confused between ncbi gse and gds datasets , i want to know the importance of ncbi gds ,can we use this data for analysis,does it represent the complete experiment ?? can anyone tell the difference between ncbi gse and gds ??? ...
gds gse forum ncbi geo written 3.4 years ago by manasa22.reddy40 • updated 3.4 years ago by Sean Davis25k
8
votes
2
answers
3.3k
views
2
answers
what is the difference between gene set test analysis and gene set enrichment analysis?
... what is the difference between gene set  test analysis and gene set enrichment analysis?? ...
forum analysis microarray written 3.7 years ago by manasa22.reddy40 • updated 3.7 years ago by Giovanni M Dall'Olio26k
0
votes
0
answers
841
views
0
answers
Forum: microarray analysis ,tool development
... I want to create some tool or database related to  microarray ,can anyone suggest me some ideas . ...
forum myposts written 3.8 years ago by manasa22.reddy40

Latest awards to manasa22.reddy


Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1763 users visited in the last hour