User: manasa22.reddy

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United States
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4 months ago
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4 years, 9 months ago
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Posts by manasa22.reddy

<prev • 12 results • page 1 of 2 • next >
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CROP-seq data analysis
... Hi, I am a new bie to single cell sequencing analysis. I have to analyze CROP-seq data, I am going through the following paper, https://www.nature.com/articles/nmeth.4177. I have to use cell ranger ( instead of DROP-seq software) as the first step to process single cell data.I wanted to know how to ...
next-gen rna-seq written 4 months ago by manasa22.reddy40 • updated 4 months ago by jockbanan390
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Running RNA mats pipeline using fastq files as input ,unable to generate star index folder
... Hi everyone , Iam trying to understand rmats pipeline for my project.iam trying to run the pipeline with test files. provided in the tutorial . I am successful in running the pipeline using bam files .I have problem running pipeline using fastq files ,I am confused about star index folder , where d ...
tool rna-seq written 15 months ago by manasa22.reddy40 • updated 14 months ago by darbinator220
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msi sensor for microsatellite instability detection
... Hi everyone , I have been working with MSI sensor pipeline, I got the following error - "Same reference genome file should be used in both 'msisensor scan' and 'msisensor msi' steps!!!" I am working on GSE 30833 dataset and specfically using GSE64988 tumor sample.Used hg18 as reference genome as ...
next-gen written 18 months ago by manasa22.reddy40
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using colorspace in d3heatmap
... hi everyone, anyone have an idea about how to use colorspace in d3heatmap.i want to construct a interactive heat map ...
R colorspace heatmaps written 3.4 years ago by manasa22.reddy40
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Comment: C: GO term analysis
... figure no 6 in follwing article https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148957/ ...
written 3.4 years ago by manasa22.reddy40
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Comment: C: GO term analysis
... yeah iam working on venn diagrams ,but i also need to plot a graph which is somewhat like the image i have linked in post. ...
written 3.4 years ago by manasa22.reddy40
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GO term analysis
... ![enter image description here][1]we have done micro array analysis for 3 conditions,we have separated all the deg for all three conditions and we have performed gene set enrichment analysis for deg genes for all three conditions.Now i have 3 files related to 3 conditions with following columns(gene ...
R gene set enrichment analysis microarrray data written 3.4 years ago by manasa22.reddy40 • updated 3.4 years ago by Benn8.0k
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finding overlapping go terms
... I have three set of excel files related to some disorder , with the below columns and i am supposed to find overlapping go terms and then analyse how the go terms overlapped is causing the disorder GO name; Universe set;No. of genes; No. of input genes;No. of overlapping genes ;p-value;Gene IDs; ...
R gene set enrichment analysis written 3.4 years ago by manasa22.reddy40
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ncbi gds datasets
... iam a new user of ncbi geo,so iam confused between ncbi gse and gds datasets , i want to know the importance of ncbi gds ,can we use this data for analysis,does it represent the complete experiment ?? can anyone tell the difference between ncbi gse and gds ??? ...
gds gse forum ncbi geo written 4.4 years ago by manasa22.reddy40 • updated 4.4 years ago by Sean Davis26k
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what is the difference between gene set test analysis and gene set enrichment analysis?
... what is the difference between gene set  test analysis and gene set enrichment analysis?? ...
forum analysis microarray written 4.6 years ago by manasa22.reddy40 • updated 4.6 years ago by Giovanni M Dall'Olio27k

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