User: carlota.rubio

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Posts by carlota.rubio

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Comment: C: How to convert exon genomic coordinates to protein coordinates
... I see, I understand it now. Thanks!!! ...
written 4.1 years ago by carlota.rubio0
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Comment: C: How to convert exon genomic coordinates to protein coordinates
... The thing is I am not interested in the length of the exons in aa... I was using this measure to see if I could directly translate from exon start/end genomic coordinates to protein coordinates like (where EXON_START is the Genomic CODING exon start) this example for GATA3: ENSG ENST ...
written 4.1 years ago by carlota.rubio0
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Comment: C: How to convert exon genomic coordinates to protein coordinates
... I forgot to add the + 1 in my comment sure, sorry. About UTRs, as far as I know they are not considered coding so must be out of the Genomic coding start/end attribute..right? I have tried using CDS coordinates but same happens (i.e. GATA3 canonical transcript in ensembl v70) ...
written 4.1 years ago by carlota.rubio0
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How to convert exon genomic coordinates to protein coordinates
... I am trying to convert exon start/end from genomic coordinates to protein. I have been using Ensembl-Biomart exon attribute:  Genomic coding start/end. I assume that this one refers to the start and end of the exon of only of the coding region. So if for each gene I start from exon 1 and I start cou ...
genome gene exon myposts written 4.1 years ago by carlota.rubio0 • updated 4.1 years ago by Juke-342.8k

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