User: kevin.wyatt.mcmahon

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Posts by kevin.wyatt.mcmahon

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Answer: A: Updating dbSNP rs ids from old SNP data
... I have a question related to this, so I thought I might just stay on the same thread: I have a VCF file of variants (what else?) from hg18-aligned sequences. I need to convert these variants to hg19. My question is: do I need to be concerned about the difference in sequence between the two genome ...
written 3.8 years ago by kevin.wyatt.mcmahon0
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Two UCSC bedgraph tracks next to each other
... I'm trying to make a BEDGRAPH track to share with others on UCSC.   I have 4 contigs, followed by 4 more contigs (a total of 8).  The only differences between the first 4 and the second 4 are the color and positions (they directly abut one another - as you can see from my code below): I need to s ...
custom track ucsc bedgraph written 4.0 years ago by kevin.wyatt.mcmahon0 • updated 3.4 years ago by Chirag Nepal2.2k
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Comment: C: UCSC Custom Track download
... This is some great advice to start with, Ryan!  Thanks so much!  I've been looking into the VCF  and I'm wondering about those, but I hadn't thought about trying the BAM format.  Off to a good start! ...
written 4.0 years ago by kevin.wyatt.mcmahon0
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UCSC Custom Track download
... I'm trying to create a new Custom Track for UCSC, but I'm not sure exactly how to do it.   I've gone through the tutorial and have made all sorts of tracks using it.  But I'm really trying to make a specific type of track: not unlike the "Genome Position" track that comes as one of the default tra ...
forum ucsc custom tracks written 4.0 years ago by kevin.wyatt.mcmahon0 • updated 3.5 years ago by Biostar ♦♦ 20

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