User: steve

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steve1.9k
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Posts by steve

<prev • 221 results • page 1 of 23 • next >
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Comment: C: How read a CSV file skipping the first column using python
... thanks I updated it ...
written 12 days ago by steve1.9k
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Answer: A: How read a CSV file skipping the first column using python
... To skip the first column: $ printf 'foo,bar\n1,2\n' > test.csv >>> import csv >>> with open('test.csv') as fin: ... reader = csv.reader(fin) ... for row in reader: ... print(row[1:]) ... ['bar'] ['2'] To skip the first r ...
written 12 days ago by steve1.9k
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Comment: C: MD into bioinformatics
... If you want to learn more about bioinformatics, there are plenty of free classes you can take on Coursera and edX ...
written 4 weeks ago by steve1.9k
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Comment: C: MD into bioinformatics
... In my experience its usually the Bioinformatician who is aiding the MD, not the other way around. An MD can reach a much higher position e.g. in genomic medicine than a Bioinformatician, I think. ...
written 4 weeks ago by steve1.9k
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Comment: C: How to load data into R from an external hard drive?
... If you are using Rstudio, its a good idea to use the "Projects" feature in order to keep your working directory set consistently. Generally, using `setwd()` is a bad practice and will lead to headaches down the road. ...
written 4 weeks ago by steve1.9k
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Comment: C: How to load data into R from an external hard drive?
... if you are lucky enough to be using a Mac, you can simply drag the file from the Finder to the Terminal to reveal the full path. ...
written 5 weeks ago by steve1.9k
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Comment: C: merging data frames in r
... column names do not need to be sorted, they only need to exist in both dataframes. `rbind(df1, df2)` would return a new dataframe with the rows of `df2` appended to the bottom of `df1` ...
written 9 weeks ago by steve1.9k
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Comment: C: Overlapping SNPs in R
... Assuming you have variants loaded into a dataframe in R in the format of Chrom Pos Ref Alt, I typically do this by making a new column in the dataframe where I concatenate those fields into a single text string. Then I make a new `list` out of such columns for all the datasets I am overlapping, and ...
written 9 weeks ago by steve1.9k
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Comment: C: Database for longterm storage of genomic data
... dont put them in a database. Put them somewhere on the server and store paths to the files in the database. ...
written 10 weeks ago by steve1.9k
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Comment: C: Conda on MacOS
... why are you using `curl` instead of the `wget` command you posted? ...
written 3 months ago by steve1.9k

Latest awards to steve

Popular Question 9 weeks ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Popular Question 5 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
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Popular Question 9 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Visualization of Homer mergePeaks output Venn?
Epic Question 10 months ago, created a question with more than 10,000 views. For Creating Interactive Volcano Plots with R and Plot.ly
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Popular Question 10 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Popular Question 11 months ago, created a question with more than 1,000 views. For Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
Scholar 11 months ago, created an answer that has been accepted. For A: HOMER mergePeaks totals don't add up to peaks input
Popular Question 12 months ago, created a question with more than 1,000 views. For How to tell which transcript is the canonical transcript?
Popular Question 13 months ago, created a question with more than 1,000 views. For How to tell which transcript is the canonical transcript?
Commentator 14 months ago, created a comment with at least 3 up-votes. For C: StackExchange/Area51 bioinformatics is back
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Visualization of Homer mergePeaks output Venn?
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Appreciated 15 months ago, created a post with more than 5 votes. For Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
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Great Question 17 months ago, created a question with more than 5,000 views. For Creating Interactive Volcano Plots with R and Plot.ly
Appreciated 17 months ago, created a post with more than 5 votes. For Automatic IGV snapshot script
Popular Question 18 months ago, created a question with more than 1,000 views. For How to tell which transcript is the canonical transcript?
Popular Question 19 months ago, created a question with more than 1,000 views. For Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
Commentator 21 months ago, created a comment with at least 3 up-votes. For C: StackExchange/Area51 bioinformatics is back
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Student 22 months ago, asked a question with at least 3 up-votes. For How to tell which transcript is the canonical transcript?

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