User: steve

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steve1.9k
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Posts by steve

<prev • 225 results • page 1 of 23 • next >
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Comment: C: How to generate a stripplot like this in Python or R?
... in R you can just make a scatter plot in something like ggplot2. You could use facets per gene. ...
written 2 days ago by steve1.9k
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Comment: C: Creating Interactive Volcano Plots with R and Plot.ly
... sounds like your object `diff_df` is missing column 'Fold'. I would step through it line by line in Rstudio and double check that nothing is missing. ...
written 5 weeks ago by steve1.9k
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Comment: C: Bioinformatics question regarding multilevel pie chart
... this looks more like a Circos plot. Also you can just make bar plots and turn them into circles, I am pretty sure you can do that with something like Imagemagick. ...
written 5 weeks ago by steve1.9k
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Comment: C: how to filter 3 variants files (in excel format) simultaneously?
... you can write a simple Python script for this. Just use the `csv` module to read each line into a dict, then you can print out the entries that match your criteria ...
written 7 weeks ago by steve1.9k
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Comment: C: How read a CSV file skipping the first column using python
... thanks I updated it ...
written 10 weeks ago by steve1.9k
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Answer: A: How read a CSV file skipping the first column using python
... To skip the first column: $ printf 'foo,bar\n1,2\n' > test.csv >>> import csv >>> with open('test.csv') as fin: ... reader = csv.reader(fin) ... for row in reader: ... print(row[1:]) ... ['bar'] ['2'] To skip the first r ...
written 10 weeks ago by steve1.9k
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Comment: C: MD into bioinformatics
... If you want to learn more about bioinformatics, there are plenty of free classes you can take on Coursera and edX ...
written 3 months ago by steve1.9k
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Comment: C: MD into bioinformatics
... In my experience its usually the Bioinformatician who is aiding the MD, not the other way around. An MD can reach a much higher position e.g. in genomic medicine than a Bioinformatician, I think. ...
written 3 months ago by steve1.9k
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Comment: C: How to load data into R from an external hard drive?
... If you are using Rstudio, its a good idea to use the "Projects" feature in order to keep your working directory set consistently. Generally, using `setwd()` is a bad practice and will lead to headaches down the road. ...
written 3 months ago by steve1.9k
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Comment: C: How to load data into R from an external hard drive?
... if you are lucky enough to be using a Mac, you can simply drag the file from the Finder to the Terminal to reveal the full path. ...
written 3 months ago by steve1.9k

Latest awards to steve

Great Question 5 weeks ago, created a question with more than 5,000 views. For Creating chromosome karyotype plot with R and ggplot2
Popular Question 4 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Popular Question 7 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Popular Question 8 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Popular Question 11 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Visualization of Homer mergePeaks output Venn?
Epic Question 12 months ago, created a question with more than 10,000 views. For Creating Interactive Volcano Plots with R and Plot.ly
Librarian 12 months ago, created a post with more than 10 bookmarks. For Creating Interactive Volcano Plots with R and Plot.ly
Popular Question 12 months ago, created a question with more than 1,000 views. For HOMER mergePeaks totals don't add up to peaks input
Popular Question 12 months ago, created a question with more than 1,000 views. For Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
Scholar 13 months ago, created an answer that has been accepted. For A: HOMER mergePeaks totals don't add up to peaks input
Popular Question 14 months ago, created a question with more than 1,000 views. For How to tell which transcript is the canonical transcript?
Popular Question 15 months ago, created a question with more than 1,000 views. For How to tell which transcript is the canonical transcript?
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: StackExchange/Area51 bioinformatics is back
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Visualization of Homer mergePeaks output Venn?
Guru 16 months ago, received more than 100 upvotes.
Appreciated 16 months ago, created a post with more than 5 votes. For Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
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Great Question 19 months ago, created a question with more than 5,000 views. For Creating Interactive Volcano Plots with R and Plot.ly
Appreciated 19 months ago, created a post with more than 5 votes. For Automatic IGV snapshot script
Popular Question 20 months ago, created a question with more than 1,000 views. For How to tell which transcript is the canonical transcript?
Popular Question 21 months ago, created a question with more than 1,000 views. For Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
Commentator 23 months ago, created a comment with at least 3 up-votes. For C: StackExchange/Area51 bioinformatics is back
Appreciated 23 months ago, created a post with more than 5 votes. For Automatic IGV snapshot script
Appreciated 24 months ago, created a post with more than 5 votes. For Automatic IGV snapshot script

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