User: eneskemalergin

Reputation:
10
Status:
New User
Location:
Canada/Vancouver/UBC
Website:
http://eneskemalergin....
Twitter:
@eneskemalergin
Last seen:
1 week, 5 days ago
Joined:
3 years, 3 months ago
Email:
e*************@gmail.com

Posts by eneskemalergin

<prev • 12 results • page 1 of 2 • next >
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Comment: C: IceLogo Plots for Python or R
... Yes, iceLogo because they provide more information in the plot that logo is shown. "While an iceLogo has a lot in common with sequence logos, especially visually, it has a number of advantages. It will always use a reference set, and it allows for changing the scoring system used." [1] 1 - http://i ...
written 11 months ago by eneskemalergin10
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IceLogo Plots for Python or R
... Hello all, I need to plot IceLogo's of the peptide sequences, to show their values corresponding to the expected values. The only option that I could find until this point is [iceLogo][1], which is written in Java and has a web server too. However the web server doesn't work sometimes. The standal ...
python visualization R written 11 months ago by eneskemalergin10 • updated 11 months ago by Hussain Ather890
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Filling the Gaps in the Chip-seq data
... Hello all, I have a chip-seq data and I realized that there are some gaps. It looks like its going with span 25 but in some parts there is no score available. Why is that? If I want to fill those gaps with -let's say- 0, how can I do that? () This is the sample from the data chr21 9411475 ...
chip-seq bash written 2.5 years ago by eneskemalergin10 • updated 2.5 years ago by Carlo Yague4.3k
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Comment: C: one hot encoding for human genome
... I actually tried, bitwise encoding but did not work as I expected. Maybe I could not manage to do it correct, I don't know. ...
written 2.5 years ago by eneskemalergin10
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Comment: C: one hot encoding for human genome
... The reason why I want encoded input, is the for the deep learning model it needs to take all the nucleotide as the same weight. If I chose to give them 1, 2 4, 8 then there will be bias between the weights, the output will be compromised ...
written 2.5 years ago by eneskemalergin10
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one hot encoding for human genome
... Hello all, I am working on a project that requires a one hot encoded human genome as a input data. I came up with a [Python script][1], however it's not efficient in memory. It's working but requires a lot of memory, for 3gb fasta file it uses almost 20gb memory. Can you help me improve the memory ...
genome machine learning written 2.5 years ago by eneskemalergin10 • updated 2.5 years ago by Steven Lakin1.4k
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Comment: C: List Of Bioinformatics Books
... Even I have a computational background I skimmed through the book which is very good, I would recommend to Biologists.  Thanks for sharing... ...
written 3.2 years ago by eneskemalergin10
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Comment: C: Informatics of RNA-Seq.
... Thank you for this useful source. ...
written 3.2 years ago by eneskemalergin10
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Comment: C: virtualenv - running Python based software in isolation
... Thanks, then best approach would be, a main server built-in in -let's say- a desktop computer and work on it by using virtualenv, right? ...
written 3.2 years ago by eneskemalergin10
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Comment: C: virtualenv - running Python based software in isolation
... Yes, exactly since we are working on internet, the net speed is a big factor. Thanks ...
written 3.2 years ago by eneskemalergin10

Latest awards to eneskemalergin

Popular Question 11 months ago, created a question with more than 1,000 views. For one hot encoding for human genome
Supporter 2.6 years ago, voted at least 25 times.

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