User: entheologist33

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Posts by entheologist33

<prev • 13 results • page 1 of 2 • next >
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Software for visualising GWAS results
... Does anyone know a good GWAS visualisation package that can be integrated into a website? I've seen a website using this one: ![enter image description here][1] [1]: https://www.infino.me/static/img/manhattan-screenshot.png Which looks brilliant. Does anyone know if that is a downloadable packa ...
software gwas code package written 2.6 years ago by entheologist3370 • updated 15 months ago by shuaichengwang0
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Where to find drug-gene interactions with IC50 values?
... I have a database of genes and a database of substances. I need to find a way to procure gene to substance interactions with their binding constants. BindingDB looks good but their API has been down every time I checked. There must be some central database of IC50/binding constants of ligands and pr ...
gene written 2.6 years ago by entheologist3370
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How to convert a URL into a DOI programmatically
... I have a database of references for my site, many of the references in there are pubmed, but some many of them are from other journals. I need a way to automatically convert the URL of studies from different journals into a DOI. I also need to get the abstract from them. I have this firefox plugin c ...
doi url pubmed written 2.7 years ago by entheologist3370
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Is there a way to convert GENE common name into IDs
... I have a database of genes, and the only ID I have for the genes are the common name, i.e. COMT, ACE, NRF2, PON1. I need to find a way to get more universally accepted IDs to go with them, like Uniprot IDs. Also I need to find the name of the protein to go with it. Do genes and proteins have unive ...
gene written 2.7 years ago by entheologist3370
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Where can I download binding constants?
... I need to obtain drug-protein interaction data for me website. For example, for aspirin I need to find how strongly it binds to COX1 and whatever other enzymes and proteins it binds to. Or for the MAOI-A gene, I need to get the binding constants for various MAO inhibitors and inducers. I found this ...
gene binding ligand written 2.7 years ago by entheologist3370
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Comment: A: How to decide how broken a gene is
... Thanks for the answers, I didn't know about VEP, SIFT and PolyPhen. I tend to use every one of those words you listed. I'm not so good with euphemisms but point received, have to be more considerate with my terminology :) So I see that VEP tells you what type of variant it is, so I'm guessing with n ...
written 3.5 years ago by entheologist3370
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How to decide how broken a gene is
... I need a way to assign a number to genes representing how broken it is depending on how many SNPs with minor alleles appear on the gene. Based on just a handful of SNPs though, not every SNP.   So lets say for example I know a few SNPs for COMT: Rs165599 AA Rs6269 AA ...
gene snp written 3.5 years ago by entheologist3370 • updated 3.5 years ago by Dan Gaston7.1k
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Answer: A: Where to find p-values for GWAS articles
... Grasp is exactly what I was looking for, thanks! ...
written 3.6 years ago by entheologist3370
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Where to find p-values for GWAS articles
... I came across this website infinome.me which relates SNPs to a few different diseases. On their site, if you click on a pubmed article, they give you a list of all the SNPs mentioned in that article along with the p-value (relating the SNP to the disease). Heres a screenshot:   ^^ scroll to the ...
p-value gwas written 3.6 years ago by entheologist3370
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Answer: A: Genotype Frequency from Ensembl BiomaRt
... The solution has been posted here: https://www.biostars.org/p/157202/     ...
written 3.7 years ago by entheologist3370

Latest awards to entheologist33

Popular Question 2.5 years ago, created a question with more than 1,000 views. For How to convert a URL into a DOI programmatically
Student 3.5 years ago, asked a question with at least 3 up-votes. For How to decide how broken a gene is

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