User: deshpandenandan1975

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20
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New User
Location:
Australia
Last seen:
1 year, 2 months ago
Joined:
5 years, 4 months ago
Email:
d******************@gmail.com

Posts by deshpandenandan1975

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Wrong feature labels when using BRIG tool
... Hi Joe, I have gone back to the manual and got the feature option. Thanks. Nandan ...
written 14 months ago by deshpandenandan197520
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Comment: C: Wrong feature labels when using BRIG tool
... Hi Joe, Thanks for your response. No I have not 'read the features in from the GBK in to the feature window'. Can you point me as to how I should do that? Is there a detailed manual which can help me get through specific steps such as these? regards, Nandan ...
written 14 months ago by deshpandenandan197520
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Wrong feature labels when using BRIG tool
... Hi, I am a new user of the tool BRIG. I am getting the **'percent alignment**' values printed in the output image as "labels" instead of the names of the gene features from the 'gbk' files when aligning two genomes. My reference is a .gbk file. I have used both -a gbk and a fasta file for the sec ...
viewer comparative genomics label brig written 14 months ago by deshpandenandan197520
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Comment: A: MISO: Extraction of splicing events from user specified gene annotation (gtf or
... Hi all, I have a related question. I have a newly created **novel.gff** file from an annotated assembled transcriptome (which contains novel isoforms in addition to the Ensembl annotated ones). How should I go about extracting splicing events from user specified gene annotation (novel.gff) and pr ...
written 2.3 years ago by deshpandenandan197520
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Comment: C: ADTEx coverage issue
... Hi 2nelly , I am facing exactly the same problem as mentioned in this blog. I am trying to use ADTEx and when the direct use of bam files did not wok, I resorted to trying to create the per-base coverage files. I have debugged every step you have discussed here, but I am usable to use the "target ...
written 3.3 years ago by deshpandenandan197520
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Query about DEXSeq for differential exon usage analysis
... Hi all, My name is Nandan Deshpande. I am working at the Systems Biology Initiative, UNSW, Sydney. I have started using DEXSeq recently. I have a few questions about using the tool ...I will appreciate if someone can assist me. My experiment design (for cancer data-set) includes 9 patients, 2 con ...
dexseq next-gen pca rna-seq written 5.4 years ago by deshpandenandan197520

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Popular Question 3.3 years ago, created a question with more than 1,000 views. For Query about DEXSeq for differential exon usage analysis

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