User: deshpandenandan1975
deshpandenandan1975 • 20
- Reputation:
- 20
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- New User
- Location:
- Australia
- Last seen:
- 1 year, 2 months ago
- Joined:
- 5 years, 4 months ago
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- d******************@gmail.com
Posts by deshpandenandan1975
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... Hi Joe,
I have gone back to the manual and got the feature option. Thanks.
Nandan ...
written 14 months ago by
deshpandenandan1975 • 20
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... Hi Joe,
Thanks for your response.
No I have not 'read the features in from the GBK in to the feature window'. Can you point me as to how I should do that?
Is there a detailed manual which can help me get through specific steps such as these?
regards,
Nandan ...
written 14 months ago by
deshpandenandan1975 • 20
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... Hi,
I am a new user of the tool BRIG.
I am getting the **'percent alignment**' values printed in the output image as "labels" instead of the names of the gene features from the 'gbk' files when aligning two genomes.
My reference is a .gbk file. I have used both -a gbk and a fasta file for the sec ...
written 14 months ago by
deshpandenandan1975 • 20
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... Hi all,
I have a related question.
I have a newly created **novel.gff** file from an annotated assembled transcriptome (which contains novel isoforms in addition to the Ensembl annotated ones).
How should I go about extracting splicing events from user specified gene annotation (novel.gff) and pr ...
written 2.3 years ago by
deshpandenandan1975 • 20
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Comment:
C: ADTEx coverage issue
... Hi 2nelly ,
I am facing exactly the same problem as mentioned in this blog.
I am trying to use ADTEx and when the direct use of bam files did not wok, I resorted to trying to create the per-base coverage files. I have debugged every step you have discussed here, but I am usable to use the "target ...
written 3.3 years ago by
deshpandenandan1975 • 20
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... Hi all,
My name is Nandan Deshpande. I am working at the Systems Biology Initiative, UNSW, Sydney.
I have started using DEXSeq recently. I have a few questions about using the tool ...I will appreciate if someone can assist me.
My experiment design (for cancer data-set) includes 9 patients, 2 con ...
written 5.4 years ago by
deshpandenandan1975 • 20
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3.3 years ago,
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For Query about DEXSeq for differential exon usage analysis
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