User: deshpandenandan1975
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Posts by deshpandenandan1975
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... Hi all,
I have a related question.
I have a newly created **novel.gff** file from an annotated assembled transcriptome (which contains novel isoforms in addition to the Ensembl annotated ones).
How should I go about extracting splicing events from user specified gene annotation (novel.gff) and pr ...
written 5 months ago by
deshpandenandan1975 • 0
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Comment:
C: ADTEx coverage issue
... Hi 2nelly ,
I am facing exactly the same problem as mentioned in this blog.
I am trying to use ADTEx and when the direct use of bam files did not wok, I resorted to trying to create the per-base coverage files. I have debugged every step you have discussed here, but I am usable to use the "target ...
written 17 months ago by
deshpandenandan1975 • 0
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... Hi all,
My name is Nandan Deshpande. I am working at the Systems Biology Initiative, UNSW, Sydney.
I have started using DEXSeq recently. I have a few questions about using the tool ...I will appreciate if someone can assist me.
My experiment design (for cancer data-set) includes 9 patients, 2 con ...
written 3.5 years ago by
deshpandenandan1975 • 0
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17 months ago,
created a question with more than 1,000 views.
For Query about DEXSeq for differential exon usage analysis
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