User: Bilouweb

gravatar for Bilouweb
Bilouweb1.1k
Reputation:
1,100
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Location:
Saclay, France
Website:
http://gcollet.ouvaton...
Last seen:
7 years, 4 months ago
Joined:
9 years, 2 months ago
Email:
b*******@free.fr

I am on post-doc at CEA-Saclay.

I work at the IBITEC-S/SIMOPRO Lab.

My research interests are in solving difficult issues from bioinformatics with efficient algorithms and math programming. I like graph theory and combinatorial optimization.

I currently work on protein multiple alignments and how to derive statistical information from them.

Posts by Bilouweb

<prev • 81 results • page 1 of 9 • next >
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Comment: C: Looking For The Mclachlan Substitution Matrix
... or on the web site directly : http://www.genome.jp/dbget-bin/www_bget?aaindex:MCLA710101 or http://www.genome.jp/dbget-bin/www_bget?aaindex:MCLA720101 ...
written 7.5 years ago by Bilouweb1.1k
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Comment: C: How To Interpret Multiple Alignment Score In Clustalw?
... I agree with this answer. The sum-of-pairs score is well explain page 304 of the paper. ...
written 7.6 years ago by Bilouweb1.1k
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Answer: A: Proteins In Sequence Identity Range
... You will not find a tool which gives you directly the solution of your problem. But a little bit of scripting and some basic tools will help. The PDB is a small databases of sequences (compared to uniprot or others). So I think it is a good idea to run psi-blast on a bigger database to get a bigger ...
written 7.6 years ago by Bilouweb1.1k
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Comment: C: Searching For Proteins That Have Similar Type Of Residues In Binding Pocket
... gcollet at ouvaton.org ...
written 7.7 years ago by Bilouweb1.1k
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Answer: A: Searching For Proteins That Have Similar Type Of Residues In Binding Pocket
... Hello, Your question make me think of my application for 3d motif search in protein structures : RASMOT3D In rasmot, you give a definition of a reference 3d motif which contains : a pdb file the residues involved in the motif for each residues, the list of equivalents residues. Given this refer ...
written 7.7 years ago by Bilouweb1.1k
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Comment: C: How Can I Detect The Similarity Of Proteins According To Special Motifs In Them?
... Some of these tools are for "amino acid segment" search in protein sequences like Logol, Stan or grappe. But if you just want string pattern recognition look here : http://www.genouest.org/spip.php?rubrique51 ...
written 7.7 years ago by Bilouweb1.1k
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Answer: A: How Can I Detect The Similarity Of Proteins According To Special Motifs In Them?
... Hello. I found many tools to search for motifs in protein or DNA on this page : genouest I hope it can be useful. ...
written 7.7 years ago by Bilouweb1.1k
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Answer: A: Discrete Mathematics And Computational Biology.
... During my phd, I used discrete mathematics to solve a variation around the Protein threading problem (link). Discrete maths are linked to graph theory, and complexity analysis which are basis for algorithm analysis. So I think it is a good course if you want to learn more on algorithms. If you don' ...
written 8.0 years ago by Bilouweb1.1k
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Answer: A: How To Find Similarity Between The 3D Protein Structures?
... I like to use TopMatch to compare Protein 3D structures quickly. But I also use Dali and MAMMOTH. ...
written 8.0 years ago by Bilouweb1.1k
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Comment: C: Save Output Into Text File, Whose Name Is A Variable
... Obviously !! I did not used sge for a long time and forgot this flag ! +1 ...
written 8.0 years ago by Bilouweb1.1k

Latest awards to Bilouweb

Supporter 7.3 years ago, voted at least 25 times.
Autobiographer 7.3 years ago, has more than 80 characters in the information field of the user's profile.
Voter 7.3 years ago, voted more than 100 times.
Guru 7.3 years ago, received more than 100 upvotes.
Teacher 7.7 years ago, created an answer with at least 3 up-votes. For A: Searching For Proteins That Have Similar Type Of Residues In Binding Pocket
Teacher 8.0 years ago, created an answer with at least 3 up-votes. For A: Discrete Mathematics And Computational Biology.
Student 8.3 years ago, asked a question with at least 3 up-votes. For How To Select Protein Sequences For Multiple Alignment ?
Appreciated 8.4 years ago, created a post with more than 5 votes. For A: Similarity Score Of Multiple Sequence Alignment
Teacher 8.4 years ago, created an answer with at least 3 up-votes. For A: Similarity Score Of Multiple Sequence Alignment
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: The Best Question To Ask In A Bioinformatics Seminar
Teacher 8.5 years ago, created an answer with at least 3 up-votes. For A: The Best Question To Ask In A Bioinformatics Seminar
Good Answer 8.5 years ago, created an answer that was upvoted at least 5 times. For A: The Best Question To Ask In A Bioinformatics Seminar
Teacher 8.6 years ago, created an answer with at least 3 up-votes. For A: Conservation Score Of Amino Acid Positions In Human Proteins
Teacher 8.6 years ago, created an answer with at least 3 up-votes. For A: Entropy From A Multiple Sequence Alignment With Gaps
Commentator 8.7 years ago, created a comment with at least 3 up-votes. For C: Do You Think I Should Study Computer Science?
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Teacher 9.2 years ago, created an answer with at least 3 up-votes. For A: Score Protein Variants Based On Frequency Of Aa In Multiple Sequence Alignment
Teacher 9.2 years ago, created an answer with at least 3 up-votes. For A: Implementation Of Blosum62 In The Source Code Of Global Pairwise Alignment Of Pr

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