User: daron.6

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daron.60
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Posts by daron.6

<prev • 5 results • page 1 of 1 • next >
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DMR.plot Erreur : Bad Request
... I am using the wonderful r package DMRcate and everything is running perfectly unless the last function DMR.plot that is giving me the error: Erreur : Bad Request I got this error message for both my own data and the example data set, however I used to succefully run this function last week, so I a ...
R dmrcate dna methylation written 6 months ago by daron.60
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Comment: C: bam-readcount empty output
... Sure, here is the input bed file I am giving to bam-readcount Chr1 12755477 12755478 Chr1 12755536 12755537 Chr1 12755637 12755638 Chr1 12755742 12755743 Chr1 12755758 12755759 ...
written 2.4 years ago by daron.60
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Comment: C: bam-readcount empty output
... Just a regular bed file, it is a list of SNPs of interest. I am looking at the nucleotide frequencies at the given position. But once again, using the bam file coming from bowtie2 bam-readcount is working perfectly. The problem is when I use bam file coming from segemehl. ...
written 2.4 years ago by daron.60
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bam-readcount empty output
... Hi, I am using the great tools bam-readcount (which I really like), but I am having a problem, when I run the tool I got nothing as an output. I successfully install the program, and I was able to use it on a set of bam file creating by bowtie2. Here is the cmd line. $ bam-readcount -l position. ...
software error alignment bam-readcount written 2.4 years ago by daron.60 • updated 2.3 years ago by michael.ante2.5k
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Visualization Split Reads mapped with Segemehl
... Hello, I am working with split read to analyze structural variant and circular DNA. I find that the tools Segemehl in extremely efficient to map split reads. However, my question is do someone find a way to visualized in a browser the split reads map using Segemehl? For instance, I am using IGV, ...
segemehl alignment rna-seq split reads written 2.9 years ago by daron.60 • updated 2.8 years ago by David Langenberger8.2k

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