User: pingEde

gravatar for pingEde
pingEde30
Reputation:
30
Status:
New User
Location:
European Union
Last seen:
2 years, 5 months ago
Joined:
3 years, 9 months ago
Email:
n************@libero.it

Posts by pingEde

<prev • 28 results • page 1 of 3 • next >
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Comment: C: DNA-seq Breast Cancer dataset
... thank you for your answer and your help, but I need DNA-seq data, not Gene expression... ...
written 2.4 years ago by pingEde30
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DNA-seq Breast Cancer dataset
... Hello! I am trying to develop a pipeline for my breast cancer data (I have DNA-seq data from normal/tumor samples) and I would like to test it with another breast cancer dataset that also include the information of the validate variants, in order to see how many FP/FN/TN/TP I will find. Is such d ...
dna-seq pipeline breast cancer written 2.4 years ago by pingEde30
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Comment: C: looking for RNA-seq pipeline
... I apologise for the confusion of my replay, I am also interested in it, but I am wondering how to deal the normalization across sample :) ...
written 2.5 years ago by pingEde30
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Comment: C: looking for RNA-seq pipeline
... Thank you for your reply. Probably I really didn't understand right how DESeq2 works... because I am looking for a tool that allow me to normalize my data across samples in order to make the expression comparable. Thanks ...
written 2.5 years ago by pingEde30
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Comment: C: looking for RNA-seq pipeline
... thank you for your reply :) I have several RNA-seq data from different samples (so I think that I should also normalize the ouputs among samples) and I want to do differential expression analysis. I would need help especially for the first phase of analysis and with normalization. Thank you! ...
written 2.5 years ago by pingEde30
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looking for RNA-seq pipeline
... Hello! I have raw mRNA data from RNA-sequincing and I am looking for a good pipeline in order to analyse it. Have you any suggestion? Thank you in advance Best regards ...
rna-seq written 2.5 years ago by pingEde30
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bcftools isec more file
... Hi all! I need to intersect my vcf files (they are 4: fileA, fileB, fileC, fileD). I would like to have a file in which there are all variant shared between all files and the other combinations. For example: 1) file0000 in which there are variables present in fileA, fileB, fileC, fileD, 2) file0 ...
intersection file written 2.6 years ago by pingEde30
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bcftools isec: weird number of output file
... Hi all :) ! I need help: I want to intersect 2 vcf file (fileA and fileB) in order to have three file: 1) common variants fileA and fileB 2) variants in fileA that are not present in fileB 3) variants in fileB that are not present in fileA I tried with this command: *bcftools isec fileA fileB ...
vcf intersection bcftools result written 2.6 years ago by pingEde30 • updated 2.6 years ago by Dan Gaston7.1k
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Answer: A: Error Cutadapt: FASTQ file is expected to start with '@
... After the download of the sra file and the conversion in fastq, cutadapat worked! ...
written 3.3 years ago by pingEde30
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Comment: C: Error Cutadapt: FASTQ file is expected to start with '@
... I am sorry but I did not see your response. the output is: @SRR1688545.1.1 1 length=28$ why there is the characters "$"? ...
written 3.3 years ago by pingEde30

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