User: mufernando

gravatar for mufernando
mufernando10
Reputation:
10
Status:
New User
Location:
Brazil
Last seen:
2 weeks, 3 days ago
Joined:
3 years, 5 months ago
Email:
m*******************@gmail.com

Posts by mufernando

<prev • 24 results • page 1 of 3 • next >
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Comment: C: drosophila reference genome - flybase >6 - explanation of files
... did you figure this out? if you did, please explain it to me! ...
written 10 months ago by mufernando10
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Comment: C: Is the DGRP data phased?
... nobody has a clue of what's going on here? ...
written 20 months ago by mufernando10
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Is the DGRP data phased?
... My question is described in the title. I thought it was phased, but according to VCFtools it isn't: vcftools --vcf dgrp2.vcf --phased --out teste VCFtools - UNKNOWN (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --vcf immune.vcf --out test ...
vcf next-gen vcftools dgrp written 20 months ago by mufernando10 • updated 18 months ago by Biostar ♦♦ 20
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Comment: C: Vcftools r2 Error: Insufficient sites remained after filtering or No data left
... Did you solve it? I'm facing the same problem. ...
written 20 months ago by mufernando10
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Comment: C: snpEff database error
... I was trying to download the same drosophila database but got the same error. Did you figure it out already, sasignor? ...
written 2.1 years ago by mufernando10
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Comment: C: How to retrieve BAM file from NCBI SRA
... Sorry, but what is ERA? ...
written 2.1 years ago by mufernando10
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How to retrieve BAM file from NCBI SRA
... I downloaded the XML of a NCBI SRA BioProject and just realized that they made public the aligned bam files. However I don't know how to retrieve them. I was downloading the fastqs from EBI ENA with wget. Here is one of the entries of the XML: SRX1801508PA_9_2012_libPool-seq of adult male Dros ...
ncbi sra bam written 2.1 years ago by mufernando10
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Comment: C: Annotate VCF with RepeatMasker
... how can I remove SNPs close to polymorphic indels? I work with Drosophila. ...
written 2.4 years ago by mufernando10
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Comment: C: Annotate VCF with RepeatMasker
... thank you for your response! I'll try to do that. ...
written 2.4 years ago by mufernando10
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Annotate VCF with RepeatMasker
... Is it possible to annotate a vcf with RepeatMasker? If so, how can I do it? Thanks ...
vcf repeatmasker written 2.4 years ago by mufernando10 • updated 2.4 years ago by Amitm1.6k

Latest awards to mufernando

Popular Question 9 months ago, created a question with more than 1,000 views. For Extract allele frequencies from VCF
Popular Question 9 months ago, created a question with more than 1,000 views. For Variant calling results in polyploidy data
Popular Question 19 months ago, created a question with more than 1,000 views. For bwa sampe: paired ends with different names

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