User: haiying.kong
haiying.kong • 190
- Reputation:
- 190
- Status:
- Trusted
- Location:
- Germany
- Last seen:
- 3 weeks ago
- Joined:
- 2 years, 7 months ago
- Email:
- h***********@gmail.com
Posts by haiying.kong
<prev
• 119 results •
page 1 of 12 •
next >
10
votes
1
answer
227
views
5 follow
1
answer
... library(KEGGREST)
> names(keggGet("map07049")[[1]])
[1] "ENTRY" "NAME" "PATHWAY_MAP" "COMPOUND" "REFERENCE"
I need to get gene list (hugo-symbol) in each pathway. How can I get this from KEGGREST?
> sessionInfo()
R version 3.3.3 (2017-03-06)
Platf ...
written 22 days ago by
haiying.kong • 190
• updated
21 days ago by
Damian Kao ♦ 14k
0
votes
2
answers
152
views
2
answers
... Thank you very much for your reply.
I have whole exome sequence data from matched blood and tumor samples, used Mirkat to identify somatic structural variations, then annotated them with gene names. ...
written 4 weeks ago by
haiying.kong • 190
1
vote
2
answers
152
views
2
answers
... I found structural variations from WES data. The top frequency genes are almost all pseudogenes.
Could anyone please give me any advice? ...
written 4 weeks ago by
haiying.kong • 190
• updated
29 days ago by
d-cameron • 1.5k
0
votes
0
answers
90
views
0
answers
Comment:
C: R survivalsvm package
... Not really. It is a general question about the software tool.
For instance, if I run the example code on the manual of the software, the predicted values are:
> pred.survsvm.reg$predicted
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8]
[1,] 13.88731 14.94699 11.12112 ...
written 6 weeks ago by
haiying.kong • 190
0
votes
0
answers
90
views
0
answers
... Dear All,
I am trying to use the R package: survivalsvm.
I can get it running without error, survivalsvm and predict.survival, but if I look at the predicted values from the output of predict.survivalsvm, the values are not easy to interpret. They did not look like expected relapse time, or pro ...
written 6 weeks ago by
haiying.kong • 190
0
votes
2
answers
141
views
2
answers
... Then, he will say:
You are making excuse to be lazy! ...
written 11 weeks ago by
haiying.kong • 190
0
votes
2
answers
141
views
2
answers
... Thanks for the advice.
If I run, there will be no driver genes identified. So nothing can be included in any paper that can be published. Just waste of my time.
But I will keep the email anyway. ...
written 11 weeks ago by
haiying.kong • 190
0
votes
2
answers
141
views
2
answers
... Such communication is impossible with such dense head, sorry to say this word.
After "because", there will be scientific explanation that involves statistics, and he refuses to hear any bioinformatics, or statistics, or mathematics in any occasion. He is 100000% pure biologist. ...
written 11 weeks ago by
haiying.kong • 190
1
vote
1
answer
148
views
1
answer
... It was very hot several years back. Is it still hot field?
I feel much is done in this field, and nothing original is coming out. ...
written 12 weeks ago by
haiying.kong • 190
• updated
12 weeks ago by
Devon Ryan ♦ 78k
0
votes
1
answer
287
views
1
answers
... Thanks again for your help.
It takes very very long to run MuTect even with many cores or nodes. So I do not have time to rerun, because I am trying to finish up soon.
Is there any way to do the filtering from MuTect output? ...
written 4 months ago by
haiying.kong • 190
Latest awards to haiying.kong
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For BWA Suddenly says fail to open file
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For Picard Output is malformed
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For Average coverage for whole exome sequencing
Student
11 weeks ago,
asked a question with at least 3 up-votes.
For Somatic Mutation Identification without Paired Normal Sample
Great Question
4 months ago,
created a question with more than 5,000 views.
For .dict file created by picard and by samtools
Popular Question
4 months ago,
created a question with more than 1,000 views.
For BWA Suddenly says fail to open file
Popular Question
6 months ago,
created a question with more than 1,000 views.
For BWA Suddenly says fail to open file
Popular Question
6 months ago,
created a question with more than 1,000 views.
For Average coverage for whole exome sequencing
Centurion
6 months ago,
created 100 posts.
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Average coverage for whole exome sequencing
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Picard SortVcf Error Message
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Picard SortVcf Error Message
Popular Question
21 months ago,
created a question with more than 1,000 views.
For .dict file created by picard and by samtools
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1757 users visited in the last hour