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User: cpad0112

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cpad0112 • 1.0k
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Posts by cpad0112

<prev • 188 results • page 1 of 19 • next >
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Comment: C: tabix for multiple vcf
... can't we use parallel some thing like: parallel tabix -f -p ::: *.vcf.gz ...
written 4 days ago by cpad0112 • 1.0k
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Comment: C: Error in RCircos.Validate.Genomic.Data
... try running the code with default graphic parameters. ...
written 4 days ago by cpad0112 • 1.0k
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Comment: C: Finding dbSNP rsIDs from a VCF file
... if you have dbSNP vcf and sample vcf, you can intersect both of them ...
written 5 days ago by cpad0112 • 1.0k
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Comment: C: How to locate a locus on the genome and get the Exon/Intron No.
... Try any genome browser like ensembl, NCBI, UCSC (online) or IGV (standalone) ...
written 5 days ago by cpad0112 • 1.0k
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Comment: C: How to create population allele frequencies for common SNPS input file for iAdmi
... For allele frequency, one can use dbSNP. Copy/pasted from https://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf/: > dbSNP RefSNP data now includes allele frequency data from 1000 Genomes > and TOPMED populations. ...
written 6 days ago by cpad0112 • 1.0k
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Comment: C: Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
... This page may help: http://grokbase.com/t/r/r-sig-phylo/112as2y3m8/replacement-for-chronogram ...
written 6 days ago by cpad0112 • 1.0k
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Comment: C: How to annotate only selected genes on a heatmap
... library(ComplexHeatmap) data(mtcars) x <- as.matrix(mtcars) labels = rownames(x)[c(1,4,5)] Heatmap(x[,c(9:11)], show_row_names = FALSE, show_row_dend = FALSE, show_column_dend = F, show_heatmap_legend =F) + rowAnnotation(link = row_anno_link(at = c(1,4,5), labels = labels), w ...
written 6 days ago by cpad0112 • 1.0k
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Comment: C: How to annotate only selected genes on a heatmap
... can you try this one (with links): data(mtcars) x <- as.matrix(mtcars) labels = rownames(x)[c(1,4,5)] Heatmap(x, show_row_names = FALSE, show_row_dend = FALSE, show_column_dend = FALSE) + rowAnnotation(link = row_anno_link(at = c(1,4,5), labels = labels), widt ...
written 6 days ago by cpad0112 • 1.0k
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Comment: C: How to annotate only selected genes on a heatmap
... lastline: heatmap.2(x, labRow = labRow) ...
written 6 days ago by cpad0112 • 1.0k
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Comment: C: Bamfile first step analysis
... esp featurecounts function ...
written 6 days ago by cpad0112 • 1.0k

Latest awards to cpad0112

Guru 6 days ago, received more than 100 upvotes.
Commentator 10 days ago, created a comment with at least 3 up-votes. For C: Excel Files corrupted in R.
Teacher 16 days ago, created an answer with at least 3 up-votes. For A: convert SNP calls to amino acid change
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: convert SNP calls to amino acid change
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: what is difference between HG-U133A and HG-U133B array ? which one to use ?
Centurion 20 months ago, created 100 posts.
Scholar 20 months ago, created an answer that has been accepted. For A: .fai file generation for a vcf file containing snps
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Finding the iIllumina index read from raw fastq file
Scholar 20 months ago, created an answer that has been accepted. For A: .fai file generation for a vcf file containing snps
Rising Star 20 months ago, created 50 posts within first three months of joining.
Scholar 20 months ago, created an answer that has been accepted. For A: .fai file generation for a vcf file containing snps
Scholar 21 months ago, created an answer that has been accepted. For A: .fai file generation for a vcf file containing snps
Scholar 21 months ago, created an answer that has been accepted. For A: .fai file generation for a vcf file containing snps
Scholar 21 months ago, created an answer that has been accepted. For A: .fai file generation for a vcf file containing snps
Scholar 21 months ago, created an answer that has been accepted. For A: .fai file generation for a vcf file containing snps
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