Moderator: cpad0112
cpad0112 ♦ 14k
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Posts by cpad0112
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... try `seqkit replace -sp "\." -r "" test.fa` and `grep -v "\." test.fa` on OP fasta sequences. ...
written 2 hours ago by
cpad0112 ♦ 14k
1
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52
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... Try:
$ awk '$0 ~ /^>16S_rRNA/ {getline seq; print $0,seq}' test.fa
$ sed -n '/^>16S_rRNA/{N;p}' test.fa
**don't** use `sed -i` ...
written 1 day ago by
cpad0112 ♦ 14k
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Comment:
C: fasta file extraction
... what is the basis of pairing from OP example? Number of lines before -- ? https://www.biostars.org/u/5268/.
$ awk -v RS="--" -v ORS="--" 'NF>3 {print}' test.fa
test_MAPQ.fasta->chr10:146793-146943
test_MAPQ.fasta:gccAAATCATTACTTTTGAAGAAATAGTTAACAATGATTATTTCTTTTTGAATGACaataa ...
written 2 days ago by
cpad0112 ♦ 14k
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... For interested candidates, address to communicate is david.hidalgo@bms.com and the role is based in Seville, Spain. Opportunity is open for applications from anywhere. ...
written 2 days ago by
cpad0112 ♦ 14k
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... For interested candidates, address to communicate is david.hidalgo@bms.com and the role is based in Seville, Spain. Opportunity is open for applications from anywhere. ...
written 2 days ago by
cpad0112 ♦ 14k
0
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56
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... For interested candidates, address to communicate is david.hidalgo@bms.com and the role is based in Seville, Spain. Opportunity is open for applications from anywhere. ...
written 2 days ago by
cpad0112 ♦ 14k
0
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66
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... Please furnish email ID to communicate and post if this is an international opportunity. ...
written 2 days ago by
cpad0112 ♦ 14k
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3
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145
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... You should have tried https://www.biostars.org/u/78880/ 's solution. It's easy to understand ...
written 3 days ago by
cpad0112 ♦ 14k
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3
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145
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3
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... ? If it's an exercise, are you not supposed to work on it, by your self? At least you should have tagged it as exercise. ...
written 4 days ago by
cpad0112 ♦ 14k
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2 days ago,
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For C: geom_bar plot with several variables
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10 days ago,
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For A: Finding the iIllumina index read from raw fastq file
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19 days ago,
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For A: .fai file generation for a vcf file containing snps
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7 weeks ago,
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For C: Metagenomic Data management
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For A: Finding the iIllumina index read from raw fastq file
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9 weeks ago,
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For A: .fai file generation for a vcf file containing snps
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For C: can someone read this result to me
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For A: Finding the iIllumina index read from raw fastq file
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For C: Problem installing Rgraphviz in R
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For A: .fai file generation for a vcf file containing snps
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For A: Analysis past the differentially expressed genes: RNAseq
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For A: convert SNP calls to amino acid change
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For A: convert SNP calls to amino acid change
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For A: convert SNP calls to amino acid change
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