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Posts by the_smiao
... Hi @Ghani, Don't use HaplotypeCaller with aDNA, ti is optimized and designed to process 30X + datasets. You can experiment with HaplotypeCaller, however, with less than 1X on average, stick with calling pseudo-haploids using random draw. You simply can't call reliably diploid calls, and lowering th ...
... Can you please describe what you have done, it would be very helpful. ...
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