User: Bnfoguy

gravatar for Bnfoguy
Bnfoguy70
Reputation:
70
Status:
New User
Location:
New Jersey, USA
Last seen:
8 years, 7 months ago
Joined:
9 years, 8 months ago
Email:
r************@yahoo.co.in

Third year undergraduate pursuing a major in Bioinformatics. Currently working on an internship where I am supposed to use the data from the 1000 genomes website to find out human genetic variation.

Posts by Bnfoguy

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Extracting Specific Reads From Vcf File
... Thanks Mr. Lindenbaum. You are a lifesaver! ...
written 8.6 years ago by Bnfoguy70
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Extracting Specific Reads From Vcf File
... Hello, I am trying to extract indels with coverage ~1 and they are in a VCF file. How do I write a python script or a shell commnad to extract those indels with coverage 1 only? This is the data: chr1 1548545 . T TAGATCG 22.5 . INDEL;DP=2;VDB=0.0251;AF1=1;AC1=2;DP4=0,0,1, ...
vcf indel script file python written 8.6 years ago by Bnfoguy70 • updated 3.7 years ago by Begali0
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Cigar And Sequence Length Inconsistent
... Hello Everyone, I have been working with cancer exome data and I have two fastq files. I put these files into stampy for paired end mapping and got a sam file. Unfortunately, the stampy script crashed after running close to 10 hours. When I tried to convert the .sam file to bam for mat I get the fo ...
sequence cigar length samtools written 8.7 years ago by Bnfoguy70 • updated 7.0 years ago by Biostar ♦♦ 20
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Automating Database Searches
... I am trying to write a program for automating a process to find gene exons and introns to find genetic variation in genes. What I want to do is to write a script that will access the BioMart database and perform this function for me. Does anyone have an idea as to how this can happen? Thank you, B ...
ensembl biomart search written 9.6 years ago by Bnfoguy70 • updated 9.6 years ago by Akk210
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Comment: C: Mapping Ensembl Identifiers To Reference Genome
... It worked out just like you advised me to do. Thanks again. ...
written 9.7 years ago by Bnfoguy70
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Comment: C: Mapping Ensembl Identifiers To Reference Genome
... I think I was having problems finding the ENSG id as you said. I will use your suggestion and go from there. Thank you for your help. ...
written 9.7 years ago by Bnfoguy70
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Mapping Ensembl Identifiers To Reference Genome
... Hello, I am trying to map ensembl identifiers to the reference genome GRCh 37. I am new to this and do not have much of an idea as to how I should proceed with this. Any help in this matter would be appreciated. ...
genome ensembl reference mapping identifiers written 9.7 years ago by Bnfoguy70 • updated 9.7 years ago by Lyco2.3k

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