User: annadv

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annadv0
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Posts by annadv

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Using limma for scRNAseq data
... Hello All, I would like to ask for advice on using limma for differential expression analysis of scRNAseq data. I usually use Seurat, but I would really like to know whether limma is also a suitable tool for scRNAseq data. I've tried to search for papers and I couldn't find a stable answer to this ...
limma scrnaseq written 5 days ago by annadv0 • updated 5 days ago by igor10k
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TCGA RNAseqVer2 batch effects
... Hello All, I have a question regarding the examination of Lung Adenocarcinoma (LUAD) data from TCGA database, specifically RNAseqV2 level3 In order to examine the batch effects in these data, I used mbatch website http://bioinformatics.mdanderson.org/main/TCGABatchEffects:Overview. Based on the nu ...
tcga batch effects rna-seq written 4.6 years ago by annadv0

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Popular Question 4.6 years ago, created a question with more than 1,000 views. For TCGA RNAseqVer2 batch effects

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