User: saamar.rajput

gravatar for saamar.rajput
Reputation:
10
Status:
New User
Location:
Germany
Last seen:
1 month, 3 weeks ago
Joined:
2 years, 8 months ago
Email:
s************@gmail.com

Posts by saamar.rajput

<prev • 32 results • page 1 of 4 • next >
0
votes
0
answers
114
views
0
answers
Comment: C: Human genes correlation to Bacterial genes
... To identify bacterial and human genes with similar expression kinetics ...
written 8 weeks ago by saamar.rajput10
0
votes
0
answers
114
views
0
answers
Comment: C: Human genes correlation to Bacterial genes
... I am trying to correlate every single human gene with every single bacterial gene by pearson correlation using the the read counts of the genes. ...
written 8 weeks ago by saamar.rajput10
0
votes
0
answers
114
views
0
answers
Human genes correlation to Bacterial genes
... I have read counts for RNAseq data for human and bacteria with three replicates each. I have transformed the absolute read counts to Z-scores and now I want to do correlation analysis between the Z-scores of the human genes and the bacterial genes. My data looks like this head(Human) ...
gene R next-gen rna-seq written 8 weeks ago by saamar.rajput10
2
votes
1
answer
216
views
1
answer
Locate Kegg Pathways from my network
... I am working on big networks of genes. I want to locate KEGG/Reactome pathways in my network. I have already tried cytoKegg and ReactomeFI (Plugins of Cytoscape), they only give me a list of Pathways with the genes in it. But I want to visually see the grouped genes from my network which belong to ...
gene R written 4 months ago by saamar.rajput10 • updated 4 months ago by Jean-Karim Heriche15k
0
votes
0
answers
194
views
0
answers
Reactome Pathway Analysis from command line
... I have a list of genes or may be a file containing a list of genes. I want to see the pathways from Reactome that are enriched with the gene list i have (not just a list of pathway but the visualization from the Reactome Pathway database), But I want to do this by a command line. Is it possible ? I ...
gene rna-seq written 4 months ago by saamar.rajput10
1
vote
2
answers
601
views
2
answers
FDR and Pvalue in EdgeR
... I am doing differential expression analysis on my data. I am getting all the results i want except for the FDR value. I want to know both the pvalue for the gene and the adjp for the gene. How to get that ? here is my code and my result exprs <- as.matrix(read.table(exprsFile, header ...
R rna-seq written 8 months ago by saamar.rajput10 • updated 6 months ago by Marks0
0
votes
0
answers
282
views
0
answers
(Closed) Adding shot Noise to RNAseq counts
... I want to add Shot Noise in my RNAseq counts data, does anybody know how to do that? ...
rna-seq written 9 months ago by saamar.rajput10
0
votes
0
answers
387
views
0
answers
Comment: C: Inserting Noise into RNA-seq raw counts
... What do you suggest then? ...
written 9 months ago by saamar.rajput10
1
vote
0
answers
387
views
0
answers
Inserting Noise into RNA-seq raw counts
... I have a RNA-seq raw counts data and I want to test a software for which i want to compare the results of data with noise and data without noise in the counts. For this i need to add some noise into my RNA-seq raw counts data. Can somebody suggest how to add noise into my data at the transcript cou ...
next-gen rna-seq written 9 months ago by saamar.rajput10
2
votes
1
answer
259
views
1
answer
Extracting selected gene interaction from an interanction file
... I have a text file "Interaction" with gene gene interactions in this format a1cf apobec1 a1cf ep300 a2m actb a2m ambp a2m apoa1 a2m app a2m bmp1 a2m cdc42 a2m f2 a2m ep300 The first column is the source and the second column ...
gene R rna-seq written 10 months ago by saamar.rajput10 • updated 10 months ago by Devon Ryan80k

Latest awards to saamar.rajput

Supporter 9 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1521 users visited in the last hour