User: Bionic

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Bionic0
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Posts by Bionic

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Comment: C: Unable To Replicate Splice Junction In Tophat
... Dan: Thanks for sharing your experience with us. After all you have examined, I was wondering which of these tools you recommend for splice junction study( MapSplice or Tophat2). ...
written 3.6 years ago by Bionic0
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Alternative splicing using rMATS
... I would like to study alternative splicing profile of several patients.I need a tool that takes bam file as input and creates output with number of splice variants for each gene ( ex. exon skipping, intron retention, mutually exclusive, alternative 3' acceptor site...). I tried MISO but it keeps gi ...
rna-seq mats alternative splicing written 3.6 years ago by Bionic0
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Comment: C: Identification of major isoform per gene from RNA-Seq
... Could you please share your scripts! ...
written 3.6 years ago by Bionic0
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Comment: C: Deciphering Cigar
... Thanks for sharing your code. I used them to find start and end position of reads but it asks me to define ref/start/end. Any suggestions? ...
written 4.0 years ago by Bionic0 • updated 5 days ago by RamRS25k

Latest awards to Bionic

Popular Question 2.4 years ago, created a question with more than 1,000 views. For Alternative splicing using rMATS
Supporter 3.6 years ago, voted at least 25 times.

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