User: pedroamandrade

Reputation:
30
Status:
New User
Location:
Portugal
Last seen:
1 month, 3 weeks ago
Joined:
2 years ago
Email:
p*************@gmail.com

Posts by pedroamandrade

<prev • 6 results • page 1 of 1 • next >
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Input file MULTIPOOL - reference allele counts from mpileup/bam
... Hi everyone, I have been analysing a pool-seq dataset using the popoolation suite of tools, but I would like to give MULTIPOOL a try as well. However, I am having some difficulties in formatting the input file. According to the wiki ([https://github.com/matted/multipool/wiki][1]), it should be some ...
allele counts multipool written 10 weeks ago by pedroamandrade30 • updated 5 weeks ago by Biostar ♦♦ 20
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Answer: A: How to sequentially replace a string with numerical value?
... Thank you for all the quick responses. The solution by shenwei356 already worked, but I'll try the other ones and give feedback ...
written 9 months ago by pedroamandrade30
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Comment: C: How to sequentially replace a string with numerical value?
... This solution works perfectly, and it is extremely quick, thank you very much! ...
written 9 months ago by pedroamandrade30
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7 follow
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How to sequentially replace a string with numerical value?
... Hi everyone, I have a list of snps with string chromosome names that I want to replace with a sequential numerical value (preparing a qqman input file). For example, turn this: chrA chrA chrA chrB chrB chrC chrC chrC chrC ... chrZ chrZ into this ...
genome qqman written 9 months ago by pedroamandrade30 • updated 9 months ago by Malcolm.Cook760
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SNP data in phylip format
... Hi everyone, I have a SNP database that I want to convert to phylip format (later to use in Lamarc), but every example I have come across is from sequence data. When converting the data with PGDSpider there's an option to write the data as SNP-type, but afterwards the program converts it to sequenc ...
phylip snp written 19 months ago by pedroamandrade30 • updated 14 months ago by perezalquicira0
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Answer: A: How To Solve Gapfiller Error
... Hey, I know it has been a while since this has been posted, but today I ran into the same problem and found no solution on the internet until I discovered what was wrong with my fasta. In my case it was a simple space at the top of the file, with no header. Creating a header for the top line fixed ...
written 2.0 years ago by pedroamandrade30

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