User: star

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star150
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Posts by star

<prev • 140 results • page 1 of 14 • next >
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Comment: C: Can use log(CPM) of Pairwise comparison as expression level?
... Thank for reply! Yes it is a normal RNA-seq. You right, I guess random one is better. But can I use log(cpm) as a scale? Or it is fine for understanding high expressed gene in comparison and if I want high expressed gene in Treatment A , it is better to have a separated normalized count table ...
written 12 days ago by star150
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Can use log(CPM) of Pairwise comparison as expression level?
... I have output of edger with log(CPM) value for comparison between e.g. treatment A vs control. I would like to know, - can I use this value for selecting high expressed gene (for qPCR validation). ? - can use this value as measurement of expression in treatment A? Or I should get a separate norm ...
rna-seq edger gene-expression written 12 days ago by star150
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Comment: C: How many storage needs for Whole genome sequencing?
... Thanks for the reply, do you have any clue about the output size of variant calling using GATK? ...
written 26 days ago by star150
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Comment: C: How many storage needs for Whole genome sequencing?
... I am working on the Human Genome. ...
written 26 days ago by star150
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How many storage needs for Whole genome sequencing?
... I am going to start the whole genome study and I like to have an estimation about the storage which is used for analyzing, I know it depends on several things like coverage, single end or paired-end and so on, but if anyone can help me and give an estimation it would be great! I like to have WGS fr ...
bioinformatics whole genome sequencing sequencing written 26 days ago by star150 • updated 26 days ago by ATpoint17k
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Comment: C: What is the statistics test on proportion data
... Thanks for your answer! ...
written 4 weeks ago by star150
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Comment: C: What is the statistics test on proportion data
... The reason for deleting was an incorrect question! I was not interested in the differences between groups (G1, G2 and G3). I've deleted it to post the correct question! ...
written 4 weeks ago by star150
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Comment: C: What is the statistics test on proportion data
... It's not my own data. I only know it's a kind of classification measurement that shows the proportion of cells that clustered together in each sample. ...
written 4 weeks ago by star150
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What is the statistics test on proportion data
... Hi, I would like to perform a statistical test to see whether there is any significant differences between proportions in three different groups (G1, G2, G3) among different runs. The ID refers to different subjects. The sum of G1, G2 and G3 is always 1 as they are proportions. I’m interested in c ...
lme R glmer statistics written 4 weeks ago by star150
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Comment: C: terminate called after throwing an instance of 'std::bad_alloc?
... Thanks for your reply, It is working when I am getting a subset of B file. So I will split that file to 2-3 files then run command. ...
written 6 weeks ago by star150

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