User: XBria

gravatar for XBria
XBria50
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50
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germany
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1 day, 4 hours ago
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4 years ago
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Posts by XBria

<prev • 116 results • page 1 of 12 • next >
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Gene Set Enrichment Analysis
... Hi, I am new to "Enrichment Analysis". Can anyone please kindly answer all my questions? I have 8 modules of genes to enrich and interpret them using the results of the published papers related to these modules or genes. should I perform pathway enrichment analysis or gene enrichment analysis ? ( ...
enrichment analysis modules gsea written 1 day ago by XBria50 • updated 1 day ago by Kevin Blighe49k
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Comment: C: STRING does not support networks larger than 2000 nodes.
... Good to know :) , Thanks ...
written 6 weeks ago by XBria50
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Comment: C: STRING does not support networks larger than 2000 nodes.
... No, I have not, You mean for number of proteins more than 2000 we always need to use apps or package ? ...
written 6 weeks ago by XBria50
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STRING does not support networks larger than 2000 nodes.
... Hi, A beginner question, I upload a file containing DEG to STRING-db. An error pops up as : "We do not support networks larger than 2000 nodes. Please go back and reduce the number of proteins that you provide as input and specify the input organism. " I need to keep the number of DEG unchanged. ...
network string written 6 weeks ago by XBria50 • updated 3 days ago by Biostar ♦♦ 20
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How to remove some known samples manually after hierarchical clustering observation ?
... Hi, A basic question :) I have some samples to obtain DEG. After Hierarchical clustering, decided to remove a couple of samples. How may I (manually) remove them ? 1- before which process should I add the codes (before outlier detection? , before normalization ?) ? 2- Any tips or suggestions befor ...
R hierarchical clustering written 8 weeks ago by XBria50
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Comment: C: DGElist ERROR: Negative counts not allowed !
... Thanks :) ...................... ...
written 10 weeks ago by XBria50
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Comment: C: DGElist ERROR: Negative counts not allowed !
... Thanks :) ...................... ...
written 10 weeks ago by XBria50
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Comment: C: DGElist ERROR: Negative counts not allowed !
... Benn, This is what I changed and saw no error data=DGEList(count_found_new_2[,-1],samples = sample_info, group =group_,genes = genes_ ) It seems that the first column is where the problem occurs. the name of genes I mean (ENS0000,...) Do you now have any suggestion ? ...
written 10 weeks ago by XBria50
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Comment: C: DGElist ERROR: Negative counts not allowed !
... All are FALSE. I think the TRUE value is what you mean. ...
written 10 weeks ago by XBria50
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Comment: C: DGElist ERROR: Negative counts not allowed !
... I just checked. They are all integer. sapply(count_found_new_2, typeof) ...
written 10 weeks ago by XBria50

Latest awards to XBria

Popular Question 6 weeks ago, created a question with more than 1,000 views. For A hot topic in Bioinformatics 2017
Popular Question 6 weeks ago, created a question with more than 1,000 views. For STAR index generation option --sjdbOverhang for paired-end ?
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Comparison of log file : STAR vs Hisat
Popular Question 8 weeks ago, created a question with more than 1,000 views. For A hot topic in Bioinformatics 2017
Popular Question 9 months ago, created a question with more than 1,000 views. For A hot topic in Bioinformatics 2017
Popular Question 9 months ago, created a question with more than 1,000 views. For Installing R version 3.2.2 on Ubuntu (17.04)
Popular Question 9 months ago, created a question with more than 1,000 views. For Comparison of log file : STAR vs Hisat
Popular Question 9 months ago, created a question with more than 1,000 views. For How to down-sample a full data
Popular Question 9 months ago, created a question with more than 1,000 views. For hisat2 run error
Popular Question 9 months ago, created a question with more than 1,000 views. For STAR outputs interpretation
Centurion 11 months ago, created 100 posts.
Popular Question 19 months ago, created a question with more than 1,000 views. For A hot topic in Bioinformatics 2017
Supporter 21 months ago, voted at least 25 times.

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