Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: Lila M

gravatar for Lila M
Lila M • 390
Reputation:
390
Status:
Trusted
Location:
UK
Last seen:
3 hours ago
Joined:
2 years, 11 months ago
Email:
p*************@gmail.com

Posts by Lila M

<prev • 261 results • page 1 of 27 • next >
0
votes
1
answer
73
views
1
answers
Comment: C: Problems running VC GATK: SAM/BAM/CRAM file dedup.bam is malformed
... And how can I get this info? ...
written 3 days ago by Lila M • 390
0
votes
1
answer
73
views
1
answers
Comment: C: Problems running VC GATK: SAM/BAM/CRAM file dedup.bam is malformed
... Not at all with samtools view -H file.bam @HD VN:1.4 SO:coordinate @SQ SN:chr1 LN:248956422 @SQ SN:chr2 LN:242193529 @SQ SN:chr3 LN:198295559 @SQ SN:chr4 LN:190214555 but nothing comes up with: samtools view -H file.bam | grep '^@RG' does it means that my BAM file do ...
written 3 days ago by Lila M • 390
9
votes
1
answer
73
views
5 follow
1
answer
Problems running variant calling (VC) GATK: SAM/BAM/CRAM file dedup.bam is malformed
... Hi everybody, I'm trying to carry out some VC analysis, but I'm not very advanced at it, so I am a bit struggle... For my RNA-seq samples, I've run the following command lines: #1 Mark duplicates ls *bam | xargs -I {} -n 1 java -jar picard.jar MarkDuplicates I={} O={}.dedup M={}.metrix.t ...
gatk vc rna-seq written 3 days ago by Lila M • 390
0
votes
5
answers
167
views
5
answers
Comment: C: How can I get only the rows when for the converge points : - +
... Thank you! I've never heard about this toturial before. ...
written 25 days ago by Lila M • 390
0
votes
5
answers
167
views
5
answers
Comment: C: How can I get only the rows when for the converge points : - +
... thank you for the update! ...
written 25 days ago by Lila M • 390
0
votes
5
answers
167
views
5
answers
Comment: C: How can I get only the rows when for the converge points : - +
... Do you know any tutorial or useful documentation to learn awk? I know that should be a separate question but I hope could be permitted ...
written 25 days ago by Lila M • 390
1
vote
5
answers
167
views
5
answers
Comment: C: How can I get only the rows when for the converge points : - +
... It works as expected, thank you very much. `awk` is very very helpful to solve this kinds of problems, but for me takes a while to learn it... ...
written 25 days ago by Lila M • 390
20
votes
5
answers
167
views
9 follow
5
answers
How can I get only the rows when for the converge points : - +
... Hi everybody, Maybe this is more a programming question related, but any advice could be very handy. I'm trying to select the rows when the 4th has convergence points ( **-** following by **+**) in this data sets: chr1 1275000 1284999 + chr1 1285000 1294999 - chr1 1295000 1304999 - ...
R convergence points written 25 days ago by Lila M • 390 • updated 25 days ago by Alex Reynolds ♦ 25k
0
votes
1
answer
68
views
1
answers
Comment: C: what scale does multiBigwigSummary use for score
... Yes, it was my first thought, but just to be sure. Thank you very much! ...
written 4 weeks ago by Lila M • 390
2
votes
1
answer
68
views
1
answer
what scale does multiBigwigSummary use for score
... Hi, does anyone know if the results for `multiBigwigSummary (--outRawCounts scores`) are in log? Thanks! ...
multibigwigsummary deeptools score written 4 weeks ago by Lila M • 390 • updated 4 weeks ago by Devon Ryan ♦ 84k

Latest awards to Lila M

Popular Question 5 days ago, created a question with more than 1,000 views. For how to create a minimun spanning tree with R
Popular Question 25 days ago, created a question with more than 1,000 views. For how to create a minimun spanning tree with R
Popular Question 25 days ago, created a question with more than 1,000 views. For How to convert bedgraph to bigwig?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For how to create a minimun spanning tree with R
Popular Question 5 weeks ago, created a question with more than 1,000 views. For how to create a minimun spanning tree with R
Popular Question 7 weeks ago, created a question with more than 1,000 views. For How to convert bedgraph to bigwig?
Popular Question 7 weeks ago, created a question with more than 1,000 views. For how to compare 2 fasta sequences with perl
Popular Question 8 months ago, created a question with more than 1,000 views. For How to convert bedgraph to bigwig?
Popular Question 8 months ago, created a question with more than 1,000 views. For Looking for a ClueGO (cytoscape) tutorial
Popular Question 8 months ago, created a question with more than 1,000 views. For how to compare 2 fasta sequences with perl
Popular Question 8 months ago, created a question with more than 1,000 views. For should I merge fastq files for different lanes before do QC?
Popular Question 8 months ago, created a question with more than 1,000 views. For How to annotate TTS or TES
Voter 11 months ago, voted more than 100 times.
Popular Question 13 months ago, created a question with more than 1,000 views. For how to compare 2 fasta sequences with perl
Popular Question 13 months ago, created a question with more than 1,000 views. For How to convert bedgraph to bigwig?
Scholar 16 months ago, created an answer that has been accepted. For A: How to plot a heat map for the top 30 differentially expressed genes.
Centurion 18 months ago, created 100 posts.
Supporter 18 months ago, voted at least 25 times.
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1629 users visited in the last hour