User: Lila M
Lila M • 280
- Reputation:
- 280
- Status:
- Trusted
- Location:
- UK
- Last seen:
- 13 hours ago
- Joined:
- 1 year, 9 months ago
- Email:
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Posts by Lila M
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Answer:
A: snp detection for RNA SEQ
... You can also have a look to other post with lot of information as
https://www.biostars.org/p/8237/ ...
written 6 days ago by
Lila M • 280
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... So is there any way to identify if the okazafi fragments are in the + or - strand in the human genome from bam files (ChIPseq or RNAseq)? I know that there are some studies that analyzed that in human genome (https://www.nature.com/articles/ncomms10208), but they use other NGS methodology. many than ...
written 6 days ago by
Lila M • 280
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... Thank you very much! As I can read for your comments is something difficult to address ...so I will work on it and if I found the way, I will let you know.
Thank you very much again ...
written 7 days ago by
Lila M • 280
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... Sorry for the explanation, what I want to know is if there is a way to say that the replication is happening in the same direction as transcription, not the direction perse of the strand (I know that). But for example if I have RNAseq, I can say that I have some transcript in one direction and in an ...
written 8 days ago by
Lila M • 280
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... Hi everybody, I was wondering if someone know a tool or program to analyze the specific direction of DNA replication, or in others words, to analyze if the replication is happening in the same direction as transcription.
Many thanks in advance!
...
written 8 days ago by
Lila M • 280
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... yes, that's the idea! Thanks for the confirmation! ...
written 12 days ago by
Lila M • 280
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... I was thinking on it. So this approach should work, after following the GATK "best practise" for RNA Seq data, right? ...
written 12 days ago by
Lila M • 280
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... and what about call variants independently and the merge the vcf file?
Thanks for all the information! ...
written 12 days ago by
Lila M • 280
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... So the only way is to call variant in each sample separately and then eyeballing one by one? Does not exist other way to do variant calling in a whole population? Neither with other program?
Thank you! ...
written 12 days ago by
Lila M • 280
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... Hi everybady!
I would like to calling variants in RNSeq multiple samples. Let's say that I have two different group and I would like to know the differences among them. Each study group is formed by ~ bam files. Is the first time that I do variant calling, I've also read some post as https://www.bio ...
written 12 days ago by
Lila M • 280
• updated
10 days ago by
Samuel Brady • 190
Latest awards to Lila M
Scholar
10 weeks ago,
created an answer that has been accepted.
For A: How to plot a heat map for the top 30 differentially expressed genes.
Centurion
4 months ago,
created 100 posts.
Supporter
4 months ago,
voted at least 25 times.
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