User: Lila M

gravatar for Lila M
Lila M 60
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60
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Trusted
Location:
United States
Last seen:
1 day, 10 hours ago
Joined:
1 year, 4 months ago
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Posts by Lila M

<prev • 74 results • page 1 of 8 • next >
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Comment: C: select -500 from the TSS to +500 after the TES strand +/-
... So for the strand + and - should be $2-500 $3+500? Original chr1 genestart geneend strand chr1 12627939 12676788 - chr1 17185444 17185516 - chr1 17248445 17299474 + chr1 19974104 19984949 + Result chr1 genestart geneen ...
written 2 days ago by Lila M 60
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select -500 from the TSS to +500 after the TES strand +/-
... Hi everybody! Hi have a terrible doubt, I want to select the coverage over -500 from the TSS to +500 after the TES, from my bed file : $1 $2 $3 $4 chr1 genestart geneend strand chr1 12627939 12676788 - chr1 17185444 17185516 - chr1 1724844 ...
strand sequencing coverage tes tss written 2 days ago by Lila M 60 • updated 2 days ago by Alex Reynolds17k
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... looking forward it! ...
written 4 days ago by Lila M 60
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Answer: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... The book is great, but I would like to have some information related to ChIP- seq as well ...
written 4 days ago by Lila M 60
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Comment: C: How to split a bed file according promoter window (-30 to 300bp)
... Thank you very much :) anyway, I'm going to have a look to bedops!! ...
written 5 days ago by Lila M 60
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Comment: C: How to split a bed file according promoter window (-30 to 300bp)
... I appreciate if you could specify a bit more your answer and also respond to my question, because maybe both of them are correct, the difference is that bedops is totally new for me and I would like to know if my approach is correct. Thank you ...
written 5 days ago by Lila M 60
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How to split a bed file according promoter window (-30 to 300bp)
... Hi everybody, I have a bed file of interest that I want to compare with a bigwig file to get the coverage. To do that, I am using deepTools multiBigwigSummary BED-file -b Norm -out promoter_coverage.zip --BED file.BED --outRawCounts coverage I want to calculate the coverage over the promote ...
bed chip-seq coverage deeptools edit written 5 days ago by Lila M 60
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Comment: C: How to annotate TTS or TES
... It is an example, because If I have 2000 genes, I can't look for the TTS manualy in USCS, please, could you explain your aproach better? Thank ...
written 5 days ago by Lila M 60
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Comment: C: How to annotate TTS or TES
... Also a list of more than 20000000 genes? I can't upload one by one.. can I do all at the same time? ...
written 8 days ago by Lila M 60
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Comment: C: How to annotate TTS or TES
... I have the TSS what I need is the TTS.could be ok if I do : TSS+geneLength = TTS? ...
written 8 days ago by Lila M 60

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