User: ropolocan

gravatar for ropolocan
ropolocan270
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Location:
Canada
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3 days, 17 hours ago
Joined:
2 years ago
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Posts by ropolocan

<prev • 37 results • page 1 of 4 • next >
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Comment: C: BWA aln vs. mem for 100bp reads
... Thank you so much, @genomoax! ...
written 12 weeks ago by ropolocan270
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BWA aln vs. mem for 100bp reads
... Hello everyone, Which BWA algorithm is a better choice for aligning 100 bp Illumina reads? BWA aln or BWA mem? I have read that BWA mem is usually faster, and more accurate, but what is BWA aln useful for then? Thanks. ...
bwa written 12 weeks ago by ropolocan270 • updated 12 weeks ago by Pierre Lindenbaum99k
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Comment: C: What are the benefits of creating your own R packages?
... Thank you very much your answer, @venu. Yes, by other approaches I meant not creating a library, but sharing R scripts and R Markdown documentation via Github instead. ...
written 4 months ago by ropolocan270
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Forum: What are the benefits of creating your own R packages?
... Hello Biostars community, Two of the things that occupy my mind the most are reproducible research and teaching skills to to others. I have been recently thinking of creating my own R package to distribute and document functions that I wrote. My goal for the immediate term is not to have the packag ...
R forum functions packages written 4 months ago by ropolocan270
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Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
... Hello, @kamiljaron. I was not aware of BioMake; I would have to read up on it. I do not know prolog, nor have I ever used a logical programming language, but I will read more about what BioMake has to offer. ...
written 4 months ago by ropolocan270
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Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
... Thank you very much for your answer, @Sinji. I also look forward to test Nextflow. Both workflow systems/languages have so much potential. I think they could make a very important impact on bionformatics. ...
written 4 months ago by ropolocan270
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Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
... Thank you very much for your answer, @dariober. > It seems to me that snakemake and nextflow are pretty much on a draw for all these metrics and both are pretty good (although in terms of user base and developers they are far from tools like luigi). So I think it's a difficult choice between the ...
written 4 months ago by ropolocan270
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Answer: A: Snakemake vs. Nextflow: strengths and weaknesses
... I just read this excellent review by @Jeremy Leipzig. This article can be helpful for deciding which workflow management system is more suitable to each one's needs: https://academic.oup.com/bib/article-lookup/doi/10.1093/bib/bbw020 ...
written 4 months ago by ropolocan270
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Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
... Thanks for sharing this table, @shenwei356! It is very interesting to see that `nextflow` has stream processing, workflow versioning, and full support for SLURM, in addition to having native task support for any language. I believe `snakemake` has native task support for R now as well. Thanks again ...
written 4 months ago by ropolocan270
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Forum: Snakemake vs. Nextflow: strengths and weaknesses
... I have seen increasing interest in workflow/pipeline management systems such as `snakemake` and `nextflow`. In my opinion, both seem very interesting and very promising. There is a very interesting review from 2016 in which `bash`, `make`, `snakemake` and `nextflow` were compared: https://www.jmazz. ...
forum snakemake nextflow written 4 months ago by ropolocan270 • updated 4 months ago by Sinji2.5k

Latest awards to ropolocan

Popular Question 10 weeks ago, created a question with more than 1,000 views. For Snakemake vs. Nextflow: strengths and weaknesses
Voter 12 weeks ago, voted more than 100 times.
Appreciated 4 months ago, created a post with more than 5 votes. For Snakemake vs. Nextflow: strengths and weaknesses
Supporter 8 months ago, voted at least 25 times.

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