User: mail2steff

gravatar for mail2steff
mail2steff10
Reputation:
10
Status:
New User
Location:
Potsdam, Germay
Last seen:
3 weeks, 1 day ago
Joined:
2 years, 1 month ago
Email:
m*********@gmail.com

Posts by mail2steff

<prev • 18 results • page 1 of 2 • next >
0
votes
1
answer
150
views
1
answers
Comment: C: how to identify which tissue has more alternative splicing?
... Thank you for the reply. I will check on that link. For example, brain tissue has the highest number of alternative splicing compared to other tissues. In a similar way, I am interested to find the tissues in plants. ...
written 5 weeks ago by mail2steff10
2
votes
1
answer
150
views
1
answer
how to identify which tissue has more alternative splicing?
... Dear all, I am trying to identify AS events from different tissues (5 tissues). and I did that using rMATS. But now I need to know which tissue has the highest number of alternative splicing irrespective of events (mechanisms). I am kind of stuck in this. Can anyone guide me ? ...
rmats cuffdiff alternative splicing written 5 weeks ago by mail2steff10 • updated 5 weeks ago by petebio40
0
votes
3
answers
7.3k
views
3
answers
Comment: C: Cuffdiff Says Sam Isn'T Sorted, Although It Handled It Cufflinks
... Hi, I am getting the same error. What should I alter in hits.cpp file? ...
written 7 weeks ago by mail2steff10
0
votes
1
answer
212
views
1
answers
Comment: C: DEXSeq transcripts per condition
... I am sorry for the trouble. thank you so much for ur reply. I try to understand from the result table. Sorry again ...
written 10 weeks ago by mail2steff10
0
votes
1
answer
212
views
1
answers
Comment: C: DEXSeq transcripts per condition
... Thank you so much for ur reply. I am trying to analysis like below. Which transcripts present in which tissue? ![Comparison Like this][1] [1]: https://i.imgur.com/lnvemYj.png?1 ...
written 10 weeks ago by mail2steff10
0
votes
1
answer
212
views
1
answers
Comment: C: DEXSeq transcripts per condition
... Yeah. Exactly the same way. dxd = DEXSeqDataSetFromHTSeq(countFiles,sampleData=sampleTable, design= ~ sample + exon + condition:exon,flattenedfile=flattenedFile ) dxd = estimateSizeFactors( dxd ) dxd = estimateDispersions( dxd ) plotDispEsts( dxd ) dxd = ...
written 10 weeks ago by mail2steff10
0
votes
1
answer
212
views
1
answers
Comment: C: DEXSeq transcripts per condition
... I tried this but I got the same output as previous. I am sorry I couldn’t understand how to identify tissue specific transcripts. For example I have two tissues root and flower. I gave two replicates and mentioned root and flower as my conditions. My sample Table looks like this: sampleTable ...
written 10 weeks ago by mail2steff10
0
votes
1
answer
212
views
1
answers
Comment: C: DEXSeq transcripts per condition
... Thank you so much for the reply. Ill try this ...
written 10 weeks ago by mail2steff10
1
vote
1
answer
212
views
1
answer
DEXSeq transcripts per condition
... Hello everyone I'm trying out DEXSeq for the identification of differentially expressed/spliced transcripts for my samples. I am comparing two tissues. I got the results and plots using DEXSeq by executing following command; plotDEXSeq(dxr, "gene-name", displayTranscripts=T, names=T, legend=T) B ...
dexseq rna-seq written 10 weeks ago by mail2steff10 • updated 10 weeks ago by Lila M 370
0
votes
1
answer
186
views
1
answers
Comment: C: Creation of Transcript expression file
... Output of featureCount is # Program:featureCounts v1.5.3; Command:"./featureCounts" "-a" "Arabidopsis_thaliana.TAIR10.36.gtf" "-o" "counts.txt" "accepted_hits_Bur-0.bam" Geneid Chr Start End Strand Length accepted_hits_Bur-0.bam AT1G01010 1;1;1;1;1;1 3631;3996;4486;4706;5174;5439 ...
written 11 weeks ago by mail2steff10

Latest awards to mail2steff

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1020 users visited in the last hour