User: mail2steff

gravatar for mail2steff
mail2steff0
Reputation:
0
Status:
New User
Last seen:
12 hours ago
Joined:
1 year, 11 months ago
Email:
m*********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by mail2steff

<prev • 15 results • page 1 of 2 • next >
0
votes
1
answer
150
views
1
answers
Comment: C: DEXSeq transcripts per condition
... I am sorry for the trouble. thank you so much for ur reply. I try to understand from the result table. Sorry again ...
written 20 days ago by mail2steff0
0
votes
1
answer
150
views
1
answers
Comment: C: DEXSeq transcripts per condition
... Thank you so much for ur reply. I am trying to analysis like below. Which transcripts present in which tissue? ![Comparison Like this][1] [1]: https://i.imgur.com/lnvemYj.png?1 ...
written 20 days ago by mail2steff0
0
votes
1
answer
150
views
1
answers
Comment: C: DEXSeq transcripts per condition
... Yeah. Exactly the same way. dxd = DEXSeqDataSetFromHTSeq(countFiles,sampleData=sampleTable, design= ~ sample + exon + condition:exon,flattenedfile=flattenedFile ) dxd = estimateSizeFactors( dxd ) dxd = estimateDispersions( dxd ) plotDispEsts( dxd ) dxd = ...
written 20 days ago by mail2steff0
0
votes
1
answer
150
views
1
answers
Comment: C: DEXSeq transcripts per condition
... I tried this but I got the same output as previous. I am sorry I couldn’t understand how to identify tissue specific transcripts. For example I have two tissues root and flower. I gave two replicates and mentioned root and flower as my conditions. My sample Table looks like this: sampleTable ...
written 20 days ago by mail2steff0
0
votes
1
answer
150
views
1
answers
Comment: C: DEXSeq transcripts per condition
... Thank you so much for the reply. Ill try this ...
written 20 days ago by mail2steff0
1
vote
1
answer
150
views
1
answer
DEXSeq transcripts per condition
... Hello everyone I'm trying out DEXSeq for the identification of differentially expressed/spliced transcripts for my samples. I am comparing two tissues. I got the results and plots using DEXSeq by executing following command; plotDEXSeq(dxr, "gene-name", displayTranscripts=T, names=T, legend=T) B ...
dexseq rna-seq written 21 days ago by mail2steff0 • updated 21 days ago by Lila M 350
0
votes
1
answer
150
views
1
answers
Comment: C: Creation of Transcript expression file
... Output of featureCount is # Program:featureCounts v1.5.3; Command:"./featureCounts" "-a" "Arabidopsis_thaliana.TAIR10.36.gtf" "-o" "counts.txt" "accepted_hits_Bur-0.bam" Geneid Chr Start End Strand Length accepted_hits_Bur-0.bam AT1G01010 1;1;1;1;1;1 3631;3996;4486;4706;5174;5439 ...
written 25 days ago by mail2steff0
0
votes
1
answer
150
views
1
answers
Comment: C: Creation of Transcript expression file
... Thank you. Ill try that ...
written 25 days ago by mail2steff0
0
votes
1
answer
150
views
1
answers
Comment: C: Creation of Transcript expression file
... I have the bam format of my files. I am looking for AE in different organs of At. for this analysis, I am using SUPPA. ...
written 25 days ago by mail2steff0
0
votes
1
answer
150
views
1
answers
Comment: C: Creation of Transcript expression file
... It refers to the magnitude of splicing change (ΔPSI) in the case of SUPPA ...
written 25 days ago by mail2steff0

Latest awards to mail2steff

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 930 users visited in the last hour