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Answer: Answer: Relatedness and GWAS False Signals
11 months ago by 4galaxy77 2.9k
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599
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Answer: Answer: Does Beagle use VCF information such as the "GQ" value, depth, or similar?
14 months ago by 4galaxy77 2.9k
2
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1.2k
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Answer: Answer: Allele frequency calculation for genotype dosage value
14 months ago by 4galaxy77 2.9k
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1.8k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
14 months ago by 4galaxy77 2.9k
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1.1k
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Comment: Comment: From where can I obtain vcf files of healthy exomes
15 months ago by 4galaxy77 2.9k
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1.0k
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Answer: Answer: Why Beagle v5.4 fails during phasing large genotypic data set?
15 months ago by 4galaxy77 2.9k
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0
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691
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Comment: Comment: Converting a bam dataset to vcf
15 months ago by 4galaxy77 2.9k
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928
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Answer: Answer: Phasing Classical HLA Alleles
16 months ago by 4galaxy77 2.9k
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1.5k
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Comment: Comment: problem
16 months ago by 4galaxy77 2.9k
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2.6k
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Comment: Comment: Don't choose Novogene for your sequencing projects
16 months ago by 4galaxy77 2.9k
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3
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1.2k
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Adding additional covariates to plink logistic regression model on HLA returns p-vals etc as NA
plink association_test HLA
updated 16 months ago by • 0 • written 2.6 years ago by 2.9k
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541
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Answer: Answer: PennCNV Installation on Ubuntu Linux
17 months ago by 4galaxy77 2.9k
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1
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2.8k
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Answer: Answer: Would solving many Rosalind problems show your ability for this field in job-w
17 months ago by 4galaxy77 2.9k
2
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0
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606
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Answer: Answer: Extract variants/SNPs with T>G substitution from a VCF file
18 months ago by 4galaxy77 2.9k
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1
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3.4k
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Comment: Comment: g++: error：unrecognized command line option ‘-std=c++2a’
19 months ago by 4galaxy77 2.9k
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0
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20k
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Answer: Answer: Crac: Funny And/Or Weird Names For Bioinformatics Tools
19 months ago by 4galaxy77 2.9k
2
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0
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20k
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Answer: Answer: Crac: Funny And/Or Weird Names For Bioinformatics Tools
19 months ago by 4galaxy77 2.9k
0
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1
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659
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Getting chromosome of unusual chromosome names e.g. 'CHR_HSCHR8_8_CTG1'
chromsome biomart
20 months ago by 4galaxy77 2.9k
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661
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Comment: Comment: ""ERROR：States for individual 0 are zero " when I using GLIMPSE2 for Imputation
20 months ago by 4galaxy77 2.9k
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0
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5.9k
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Comment: Comment: Using AWS for Bioinformatics
20 months ago by 4galaxy77 2.9k
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1
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2.0k
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Comment: Comment: Post-Imputation QC Problem
20 months ago by 4galaxy77 2.9k
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1
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755
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Comment: Comment: best practice to choose AF threshold based on population number
20 months ago by 4galaxy77 2.9k
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1
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661
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Comment: Comment: Merging VCF with bcftools, problems with INFO column when using tapes with merge
21 months ago by 4galaxy77 2.9k
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0
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784
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Comment: Comment: How to generate "dummy"/"fake" VCFs for testing software?
21 months ago by 4galaxy77 2.9k
6
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5
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11k
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filtering by POS in bcftools
software error bcftools
updated 22 months ago by ▴ 10 • written 5.8 years ago by 2.9k
4
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0
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615
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Comment: Comment: RNA seq analysis from the data file which received from company
22 months ago by 4galaxy77 2.9k
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1
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901
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Comment: Comment: How to obtain highest level GO term from go_id?
22 months ago by 4galaxy77 2.9k
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3
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901
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How to obtain highest level GO term from go_id?
GO-term R
updated 22 months ago by 15k • written 22 months ago by 2.9k
1
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0
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1.7k
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Comment: Comment: SALMON Index build Process Killed!
22 months ago by 4galaxy77 2.9k
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1
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1.2k
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Answer: Answer: Which 1000 genomes 30x files should I use for imputation?
22 months ago by 4galaxy77 2.9k
2
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1
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1.2k
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Comment: Comment: R packages
23 months ago by 4galaxy77 2.9k
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575
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Comment: Comment: LMM GWAS - why are population covariates included?
23 months ago by 4galaxy77 2.9k
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1.3k
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Comment: Comment: Nvidia Clara Parabricks is FREE for R&D
23 months ago by 4galaxy77 2.9k
0
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2
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1.3k
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Comment: Comment: Nvidia Clara Parabricks is FREE for R&D
23 months ago by 4galaxy77 2.9k
1
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1
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973
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Failing to compile kent utilities due to openSSL dependencies
installation vep loftee conda
updated 24 months ago by ★ 2.3k • written 24 months ago by 2.9k
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1.0k
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Comment: Comment: how to calculate BAF and LRR from bam or vcf file
24 months ago by 4galaxy77 2.9k
1
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1
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1.0k
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Comment: Comment: how to calculate BAF and LRR from bam or vcf file
24 months ago by 4galaxy77 2.9k
0
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1
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811
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Comment: Comment: Association of allele in population
24 months ago by 4galaxy77 2.9k
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1
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811
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Comment: Comment: Association of allele in population
24 months ago by 4galaxy77 2.9k
0
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1
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3.1k
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Comment: Comment: BioStars and ChatGPT
24 months ago by 4galaxy77 2.9k
1
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1
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3.1k
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Comment: Comment: BioStars and ChatGPT
24 months ago by 4galaxy77 2.9k
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1
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3.2k
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Comment: Comment: Differential gene expression analysis with no replicates using edgeR
2.0 years ago by 4galaxy77 2.9k
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0
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3.2k
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Comment: Comment: Differential gene expression analysis with no replicates using edgeR
2.0 years ago by 4galaxy77 2.9k
0
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0
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1.7k
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Comment: Comment: Understanding 1/1 output in VCF
2.0 years ago by 4galaxy77 2.9k
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0
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1.7k
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Comment: Comment: Understanding 1/1 output in VCF
2.0 years ago by 4galaxy77 2.9k
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0
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1.8k
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Comment: Comment: Locating IBD candidates with just VCF files
2.0 years ago by 4galaxy77 2.9k
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1
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1.8k
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Comment: Comment: Locating IBD candidates with just VCF files
2.0 years ago by 4galaxy77 2.9k
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0
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852
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Comment: Comment: Ped File Looks Weird
2.0 years ago by 4galaxy77 2.9k
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1
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1.8k
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Comment: Comment: Locating IBD candidates with just VCF files
2.0 years ago by 4galaxy77 2.9k
0
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1
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1.8k
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Comment: Comment: Locating IBD candidates with just VCF files
2.0 years ago by 4galaxy77 2.9k
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