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Answer: Answer: Relatedness and GWAS False Signals
4 months ago by 4galaxy77 2.8k
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429
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Answer: Answer: Does Beagle use VCF information such as the "GQ" value, depth, or similar?
6 months ago by 4galaxy77 2.8k
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797
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Answer: Answer: Allele frequency calculation for genotype dosage value
7 months ago by 4galaxy77 2.8k
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681
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Answer: Answer: Why Beagle v5.4 fails during phasing large genotypic data set?
8 months ago by 4galaxy77 2.8k
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678
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Answer: Answer: Phasing Classical HLA Alleles
9 months ago by 4galaxy77 2.8k
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430
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Answer: Answer: PennCNV Installation on Ubuntu Linux
10 months ago by 4galaxy77 2.8k
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1.9k
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Answer: Answer: Would solving many Rosalind problems show your ability for this field in job-w
10 months ago by 4galaxy77 2.8k
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Answer: Answer: Extract variants/SNPs with T>G substitution from a VCF file
10 months ago by 4galaxy77 2.8k
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19k
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Answer: Answer: Crac: Funny And/Or Weird Names For Bioinformatics Tools
12 months ago by 4galaxy77 2.8k
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19k
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Answer: Answer: Crac: Funny And/Or Weird Names For Bioinformatics Tools
12 months ago by 4galaxy77 2.8k
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830
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Answer: Answer: Which 1000 genomes 30x files should I use for imputation?
15 months ago by 4galaxy77 2.8k
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1.4k
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Answer: Answer: GWAS and vcf files. Lacking Phenotype
17 months ago by 4galaxy77 2.8k
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2.7k
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Answer: Answer: Why doesn't grep work when used on a gzipped (.gz) VCF file
18 months ago by 4galaxy77 2.8k
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0
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682
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Answer: Answer: phasing genotype
18 months ago by 4galaxy77 2.8k
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1.1k
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Answer: Answer: how to calculate %of missing genotype in vcf file
19 months ago by 4galaxy77 2.8k
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1.8k
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Answer: Answer: Number of samples and variants in .vcf file
19 months ago by 4galaxy77 2.8k
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2.6k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
19 months ago by 4galaxy77 2.8k
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Answer: Answer: Open human database with RNA sequencing and full genome/exome sequencing (rna-se
20 months ago by 4galaxy77 2.8k
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1.1k
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Answer: Answer: Can you not phase exome data?
20 months ago by 4galaxy77 2.8k
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1.4k
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Answer: Answer: PlotPCA shows small plot in plot section of R studio
20 months ago by 4galaxy77 2.8k
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2.2k
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Answer: Answer: Unknown file type error when running bcftools command
21 months ago by 4galaxy77 2.8k
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3.1k
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Answer: Answer: How to determine assembly of a VCF?
21 months ago by 4galaxy77 2.8k
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452
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Answer: Answer: Is there a tool to standartise ANY kind of human variant list file? (like vcf, p
21 months ago by 4galaxy77 2.8k
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828
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Answer: Answer: Reference-based Phasing of Chromosome X using Eagle
21 months ago by 4galaxy77 2.8k
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824
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Answer: Answer: Best NGS Bioinformatics Blogs (2022)
21 months ago by 4galaxy77 2.8k
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501
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Answer: Answer: Compress already compressed file with bgzip without decompressing first
21 months ago by 4galaxy77 2.8k
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805
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Answer: Answer: Input problem with EIGENSTRAT
22 months ago by 4galaxy77 2.8k
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706
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Answer: Answer: Deleting all the rows from ANY column that contain a key word
22 months ago by 4galaxy77 2.8k
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666
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Answer: Answer: phase trios
22 months ago by 4galaxy77 2.8k
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1.4k
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Answer: Answer: How to convert a VCF 4.1 file to Bam file please?
22 months ago by 4galaxy77 2.8k
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757
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Answer: Answer: PLINK and PLINK2, AF and MAF
23 months ago by 4galaxy77 2.8k
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418
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Answer: Answer: No such file or directory: 'buccal_swab.unmapped1.fasta'
23 months ago by 4galaxy77 2.8k
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853
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Answer: Answer: Compare VCFs against background frequencies
23 months ago by 4galaxy77 2.8k
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683
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Answer: Answer: Can PCs from PCA of "Chip Genotypes" be used for post-imputation GWAS? [to adju
23 months ago by 4galaxy77 2.8k
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1.7k
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Answer: Answer: PCA for BIG DATA
23 months ago by 4galaxy77 2.8k
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1.2k
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Answer: Answer: Running Beagle on a VCF with 1 sample
24 months ago by 4galaxy77 2.8k
2
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1
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893
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Answer: Answer: difficulty filtering vcf file with vcftools
24 months ago by 4galaxy77 2.8k
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1.3k
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Answer: Answer: Missing data per site
24 months ago by 4galaxy77 2.8k
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1.0k
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Answer: Answer: what input should I have for fineSTRUCTURE
2.0 years ago by 4galaxy77 2.8k
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577
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Answer: Answer: Eagle2 Phasing VCF files
2.1 years ago by 4galaxy77 2.8k
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1
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1.1k
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Answer: Answer: Is LD pruning required for a data set from a clonal population to prepare the da
2.1 years ago by 4galaxy77 2.8k
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1.4k
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Answer: Answer: How to pipe bcftools query to bcftools fill-tags
2.1 years ago by 4galaxy77 2.8k
2
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1
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888
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Answer: Answer: where to find GRCh38 for 1000 Genomes
2.1 years ago by 4galaxy77 2.8k
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567
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Answer: Answer: d-statistics admixtools2
2.1 years ago by 4galaxy77 2.8k
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859
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Answer: Answer: HPC settings for concatenating large VCF.GZ files
2.2 years ago by 4galaxy77 2.8k
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516
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Answer: Answer: Fam file information lost on conversation to VCF file
2.3 years ago by 4galaxy77 2.8k
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0
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473
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Answer: Answer: Possible analysis from simplified VCF files
2.3 years ago by 4galaxy77 2.8k
3
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1.0k
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Answer: Answer: VCF into Excel - changing decimal numeric value with dot instead comma into date
2.3 years ago by 4galaxy77 2.8k
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2.5k
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Answer: Answer: Issues Phasing with Eagle v2.4
2.3 years ago by 4galaxy77 2.8k
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1
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1.3k
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Answer: Answer: Confused about PED and MAP file
2.3 years ago by 4galaxy77 2.8k
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