User: 1234anjalianjali1234

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India
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Posts by 1234anjalianjali1234

<prev • 59 results • page 1 of 6 • next >
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Comment: C: MCScanX empty collinearity file.
... Thank you for the answer. ...
written 4 days ago by 1234anjalianjali123430
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Comment: A: MCScanX empty collinearity file.
... CAN ANYONE TELL ME ABOUT THE PROCEDURE OF CLOSING THIS QUESTION? ...
written 4 days ago by 1234anjalianjali123430
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Comment: C: How to run microsynteny using MCscan?
... Did you find the solution? ...
written 9 days ago by 1234anjalianjali123430
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MCScanX empty collinearity file.
... Hellow, I want to check the gene duplication of a gene within Potato genome for which I am using MCScanX. > ./MCScanX data/xyz OUTPUT is showing that there is no alingment generated: Reading BLAST file and pre-processing Generating BLAST list 1446 matches imported (1155 discarded ...
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Comment: C: Exacting lines containing Id from one file from ID from other file.
... Thank you, It worked. ...
written 10 days ago by 1234anjalianjali123430
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Comment: C: Exacting lines containing Id from one file from ID from other file.
... Sorry, I have tried join by using this command: >join -t$'\t' <(sort -d blastid.txt) <(sort -d -t$'\t' -k2,1 uniqueCDS.txt) > output.txt but my output is: > join: /dev/fd/62:13435: is not sorted: > st1 PGSC0003DMC400000001 71267700 71268573 ...
written 10 days ago by 1234anjalianjali123430
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Comment: C: Exacting lines containing Id from one file from ID from other file.
... This code is not working. ...
written 10 days ago by 1234anjalianjali123430
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Exacting lines containing Id from one file from ID from other file.
... Hellow, I want to extract the lines containing ID from my GFF file using ID fom other file. My GFF file: st00 PGSC0003DMC400069336 5046482 5046991 st00 PGSC0003DMC400069337 35003649 35012075 st00 PGSC0003DMC400069343 7843951 7845166 st00 PGSC0003DMC400069373 9133414 9134204 st ...
id extracting line written 10 days ago by 1234anjalianjali123430 • updated 10 days ago by Alex Reynolds25k
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Comment: C: Merging position of all different CDS of a single gene in one line
... Thankyou, it worked. ...
written 10 days ago by 1234anjalianjali123430
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Comment: C: Merging position of all different CDS of a single gene in one line
... No, I have sorted my original GFF file using awk command. ...
written 10 days ago by 1234anjalianjali123430

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