User: 1234anjalianjali1234

Reputation:
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New User
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India
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1 day, 6 hours ago
Joined:
4 years, 9 months ago
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Posts by 1234anjalianjali1234

<prev • 101 results • page 1 of 11 • next >
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Comment: C: Recommended graph for proteins?
... Thankyou Mensur Dlakic, I'll try to make a scatter plot of both parameters. ...
written 1 day ago by 1234anjalianjali123430
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Comment: C: Recommended graph for proteins?
... Thankyou, Mensur Dlakic But it would be great if it can also include Serine percentage. ...
written 2 days ago by 1234anjalianjali123430
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Comment: C: Denovo genome assembly annotation
... Sorry Juke, for the late reply, Done using FunGAP pipeline. Thankyou ...
written 2 days ago by 1234anjalianjali123430
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Recommended graph for proteins?
... hello, I want to plot my protein data (length and Serine amino acid percentage) into a feasible plot. Length ranges up to 300 aa. My data (have 700 proteins) Please recommend something. Thankyou ...
R plot written 2 days ago by 1234anjalianjali123430 • updated 2 days ago by Mensur Dlakic6.0k
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Comment: C: Transdecoder producing more proteins than assembly
... Yes... With default parameter. ...
written 8 months ago by 1234anjalianjali123430
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Transdecoder producing more proteins than assembly
... While using transdecoder ( TransDecoder.LongOrfs option), I am getting proteins more than the number of sequences in my assembly. Is this usual to get this kind of result? ...
rna-seq written 8 months ago by 1234anjalianjali123430 • updated 8 months ago by h.mon30k
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Comment: C: Sequence duplication levels in de novo assemblies
... It is clearly indicating that if you remove the duplicated sequences from your data, it will leave only 42.31% of original data. Refer to fastqc report for [bad illumina data][1] . please attach your whole report of fastQC. [1]: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/bad_seque ...
written 11 months ago by 1234anjalianjali123430
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EdgeR without replicate?
... I am doing DEG analysis between two sample (Normal vs Treated) without replicates using edgeR. I know there is no significance of analysis without replicates, but i have no other choice. library(edgeR) data = read.table("MYFILE-counts.txt", header=T, row.names=1, com='') bcv <- 0.2 ...
differential' edger corset rna-seq written 11 months ago by 1234anjalianjali123430
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Comment: C: edgeR negative bionomial error in without replicate data?
... Actually i need some more answers related to this question. Should i post a new question or modify this one only? ...
written 11 months ago by 1234anjalianjali123430
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Comment: C: edgeR negative bionomial error in without replicate data?
... In my second approach I have used my actual count data, as described in the question. Could you please look into that. I know there is no point of the analysis without the replicates, but I have no other choice. ...
written 11 months ago by 1234anjalianjali123430

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