User: 1234anjalianjali1234

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India
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Posts by 1234anjalianjali1234

<prev • 38 results • page 1 of 4 • next >
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Comment: C: SRA file download from NCBI
... thankyou it worked... ...
written 1 day ago by 1234anjalianjali123420
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SRA file download from NCBI
... Hi, I am trying to download SRA file from NCBI-SRA database, But unable to locate download option there, I tried using SRA Toolkit but it failed with an error of not finding that file... can anyone suggest me any other option to download those file... prefetch SRR000001 `Maximum file siz ...
sra file rna-seq written 2 days ago by 1234anjalianjali123420
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Comment: C: Mapping genes on chromosomes
... Thakyou for this reply. I made my ideogram using [Phenogram][1]. [1]: http://visualization.ritchielab.psu.edu/phenograms/plot ...
written 13 days ago by 1234anjalianjali123420
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Comment: C: Mapping genes on chromosomes
... thankyou, I got my ideogram, but could someone tell me about cytoband information (where to find?). ...
written 13 days ago by 1234anjalianjali123420
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Comment: C: Mapping genes on chromosomes
... I have the information about gene positions but i dont know how to plot these on chromosome.... i mean i want to draw chromosome ideogram... ...
written 16 days ago by 1234anjalianjali123420
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Comment: C: Mapping genes on chromosomes
... Thankyou, Now can you please solve my original problem of mapping these genes on chromosomes. >getBM(attributes=c("ensembl_gene_id","chromosome_name","start_position","end_position", "strand"), filters = 'ensembl_gene_id', values = "PGSC0003DMG400029744,PGSC0003DMG400027797,PGSC0003DMG40002 ...
written 17 days ago by 1234anjalianjali123420
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Comment: C: Mapping genes on chromosomes
... yup.. listMarts() biomart version 1 ENSEMBL_MART_ENSEMBL Ensembl Genes 91 2 ENSEMBL_MART_MOUSE Mouse strains 91 3 ENSEMBL_MART_SNP Ensembl Variation 91 4 ENSEMBL_MART_FUNCGEN Ensembl Regulation 91 also i tried.. listMarts(h ...
written 18 days ago by 1234anjalianjali123420
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Mapping genes on chromosomes
... Hellow, I want to map plant genes on the chromosomes. I have gff file. I tried using biomart but it's giving an error. library(GenomeGraphs) library(biomaRt) library(regioneR) mart <- useMart("plants_mart", host = "plants.ensembl.org") listDatasets(mart, verbose = FALSE ...
genes mapping chromosomes written 18 days ago by 1234anjalianjali123420 • updated 18 days ago by cpad01124.1k
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Comment: C: Denovo genome assembly annotation
... thankyou sir, I'll let you know. ...
written 5 weeks ago by 1234anjalianjali123420
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Comment: C: Denovo genome assembly annotation
... Thankyou Juke, I already read that paper but my problem is to run Genemark-ES ... Could you provide me with some useful tutorial regarding Genmark... ...
written 5 weeks ago by 1234anjalianjali123420

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