User: 1234anjalianjali1234

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India
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Posts by 1234anjalianjali1234

<prev • 66 results • page 1 of 7 • next >
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Comment: C: MCScanX result problem
... can you share your files so that we can go through them to know the problem? ...
written 6 days ago by 1234anjalianjali123430
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secretome P error
... hellow, I am doing secretome analysis of a fungus, i am trying to find non-classical secreted proteins for which i have to run sectretome P. when i am trying to run the software with its given data, it is giving error: Merging featuresError: id FGF1_HUMAN is missing features ( prop_vect_5d pso ...
software error secretome p written 4 weeks ago by 1234anjalianjali123430
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Comment: C: Making Zero based coordinate system in gff file
... Thakyou nitin, it worked. ...
written 8 weeks ago by 1234anjalianjali123430
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Comment: C: Making Zero based coordinate system in gff file
... Thank you for your reply Nitin, I tried this code but its giving me the output without the gene id. SL3.0ch00 0 314 CDS SL3.0ch00 399 1460 CDS SL3.0ch00 0 359 five_prime_UTR SL3.0ch00 882 975 five_prime_UTR SL3.0ch00 2513 2600 five_prime_UTR SL3.0ch00 2689 2697 five_prime_U ...
written 8 weeks ago by 1234anjalianjali123430
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Comment: C: Making Zero based coordinate system in gff file
... Thankyou Nitin, I want to work on this data only, which I have extracted according to my genes of interest from my original gff file. as per your request my sample gff is: SL3.0ch00 maker_ITAG gene 16480 17940 . + . ID=gene:Solyc00g005000.3;Alias=Solyc00g005000;Name=Solyc00g005000.3;length=146 ...
written 10 weeks ago by 1234anjalianjali123430
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Comment: C: Making Zero based coordinate system in gff file
... i have gff file, but my problem is not converting .`gff` into .`bed`. my problem is to treat each gene individually apart from its position on chromosome, i want to start each gene with 0 and end with its corresponding value using gff file. For example, if my gene1 is on chromosome 4 and it starts f ...
written 10 weeks ago by 1234anjalianjali123430
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Making Zero based coordinate system in gff file
... Hellow, I am doing gene wise analysis of intron and exon distribution, for this i have to convert my gff file information (which is based on chromosome) according to genes. I have 1 base coordinate file but `Gene Structure Display Server` input file should contain 0-based bed file. ##gff-ver ...
gene gff written 10 weeks ago by 1234anjalianjali123430
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Comment: C: MCScanX empty collinearity file.
... Thank you for the answer. ...
written 12 weeks ago by 1234anjalianjali123430
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Comment: A: MCScanX empty collinearity file.
... CAN ANYONE TELL ME ABOUT THE PROCEDURE OF CLOSING THIS QUESTION? ...
written 12 weeks ago by 1234anjalianjali123430
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Comment: C: How to run microsynteny using MCscan?
... Did you find the solution? ...
written 3 months ago by 1234anjalianjali123430

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Popular Question 5 weeks ago, created a question with more than 1,000 views. For design matrix for dge
Popular Question 5 weeks ago, created a question with more than 1,000 views. For design matrix for dge

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