User: jjaeyun

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Posts by jjaeyun

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Comment: C: how to obtain the locations of a exon and its corresponding peptide from a speci
... Hi Lando,  I thought your code was what I wanted, but actually, it is not. In your merge function at the end, it was supposed to be exon range or exon id, other than transcript id. Could you correct this? Thanks, ...
written 4.0 years ago by jjaeyun0
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Comment: C: how to obtain the locations of a exon and its corresponding peptide from a speci
... Thank you so much! It worked. And, it answers for my rest of work. Thanks again! BTW, this was my first use of Biostart. This is pretty nice ...
written 4.0 years ago by jjaeyun0
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how to obtain the locations of a exon and its corresponding peptide from a specific transcript in bioMart
... I tried to connect a transcript (ENSTxxx)'s exons to their corresponding peptides (residues) using bioMart in R. library("biomaRt") ensembl<-  useMart("ensembl") ensembl<- useDataset( "ensembl", dataset="hsapiens_gene_ensembl") getBM(c('peptide_location','exon_chrom_start','exon_chrom_end'), ...
biomart exon peptide written 4.0 years ago by jjaeyun0 • updated 4.0 years ago by informatics bot570

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