User: sharmatina189059
sharmatina189059 • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- United States
- Last seen:
- 1 week ago
- Joined:
- 3 years, 3 months ago
- Email:
- s***************@gmail.com
Posts by sharmatina189059
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... ok.. let me try these tools.. thank you so much
...
written 10 days ago by
sharmatina189059 • 30
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... Dear all
I have 40 genomes of bacterial and I need to identify ortholog and paralog genes along with core, dispensable and unique genes. I have used CD hit to make homologous gene clusters and calculate the genes in every cluster.
1- what to do for calculating core gene, accessory genes and unique ...
written 10 days ago by
sharmatina189059 • 30
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... What does 16/304 MIC value mean? It is mentioned as measurement value in PATRIC database but what does it mean? ...
written 23 days ago by
sharmatina189059 • 30
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... Dear all
I am trying to generate a heatmap having values 0, 1, 2, 3 . I need different colors for these values and 3 has to be transparent. I am using below mentioned code with which heatmap is generated well but i am unable to change color pattern.
Please help.
library(heatmaply)
heat ...
written 6 weeks ago by
sharmatina189059 • 30
• updated
6 weeks ago by
zx8754 ♦ 6.6k
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... Dear all
I have a genome sequence for which i have a different coordinate file like this:
AXXXX_XXXX 251962 252762 TnAs3 250165 250795 TnAs3 250791 250838
I need to make a figure representing the genome annotation of these 3 coordinates within min. coordinate range to max. coordinate range. How ca ...
written 12 weeks ago by
sharmatina189059 • 30
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231
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... Hi
Sibelia is used for comparing only two genomes. I can not use it for multiple genomes. ...
written 12 weeks ago by
sharmatina189059 • 30
1
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231
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5 follow
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... Dear all
I have some protein sequences and bacterial genomes. I need to have a figure showing a block diagram of upstream and dowstream genes of that particular gene within multiple bacterial genome. Is there any tool for making a synteny of one gene in multiple genomes of bacteria? ...
written 12 weeks ago by
sharmatina189059 • 30
• updated
12 weeks ago by
Joseph Hughes • 2.7k
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Comment:
C: how to change fasta headers?
... But I have retrieved it from NCBI ftp site and the format is same.
AM I doing some error? ...
written 5 months ago by
sharmatina189059 • 30
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Comment:
C: how to change fasta headers?
... I have edited my post. Thanks!! ...
written 5 months ago by
sharmatina189059 • 30
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276
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Comment:
C: how to change fasta headers?
... and if the sequences are like
>WP_000580188.1hypotheticalprotein[Acinetobacterbaumannii]
MIGQQRNILATLGIDVWIPRTQVCQKNNAHTLWRDQVVEPHESITVPTIDVPAFEQKNTQPQVLEIPKVVEEPPIVVAEVSQPEILVEKPKVIEQETITPFELQAYCLEKCVIFVDVTALETEEKQLWANIQKAKVGQYSELRWPFPLAAYQDQRGVGSYIQGFLDAVAAEKKILCLGKCTYIQHANIIHLASLKEML ...
written 5 months ago by
sharmatina189059 • 30
• updated
5 months ago by
finswimmer ♦ 10k
Latest awards to sharmatina189059
Centurion
6 weeks ago,
created 100 posts.
Popular Question
12 weeks ago,
created a question with more than 1,000 views.
For genbank file parsing
Popular Question
5 months ago,
created a question with more than 1,000 views.
For genbank file parsing
Popular Question
5 months ago,
created a question with more than 1,000 views.
For blast alignemnt query coverage
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