User: sharmatina189059
sharmatina189059 • 40
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Posts by sharmatina189059
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... import pandas as pd
climate_temp = pd.read_csv("/dataset")
climate_precip = pd.read_csv("/susceptible")
inner_merged = pd.merge(climate_temp, climate_precip, on = "Filename")
inner_merged.head()
I tried this and this works well. Thanks ...
written 4 days ago by
sharmatina189059 • 40
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... I have read this but in my case the solution given is not working. Please do let me know what else can be done?
...
written 4 days ago by
sharmatina189059 • 40
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... join -t $'\t' -1 1 -2 1 <(sort -t $'\t' -k1,1 susceptible) <(sort -t $'\t' -k1,1 dataset)
This is not working in my case. ...
written 4 days ago by
sharmatina189059 • 40
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... i have two files
file 1
Genome_no. Organism_name Filename
1 Organism1 470.1359
2 Organism2 470.7416
3 Organism3 470.7433
4 Organism4 470.1550
5 Organism5 470.1551
and file2
Acinetobacter baumannii strain MRSN10372 470.7416
Acinetobacter baumannii strain MRSN11698 ...
written 4 days ago by
sharmatina189059 • 40
• updated
4 days ago by
Pierre Lindenbaum ♦ 133k
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Comment:
C: how to unique a file row-wise?
... Thanks for the reply
perl -MList::Util=uniq -alne 'print join " ", sort { $a <=> $b } uniq @F' out_new_prophecy > perl_out_prophecy
This also works!! ...
written 6 days ago by
sharmatina189059 • 40
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Comment:
C: how to unique a file row-wise?
... It is actually a frequency table I got it using Prophecy (Emboss module). I need to check the number of isolates in which these variations exist. That's why I want to make it sort so that I can read it easily. Can you please help? I could not understand how to make it unique row-wise? ...
written 6 days ago by
sharmatina189059 • 40
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6 follow
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... Hello all
I have a input file like this:
3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 786 0 0
19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 787 0
1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 786 0 0 0 ...
written 6 days ago by
sharmatina189059 • 40
• updated
6 days ago by
dare_devil • 1.3k
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... #!/usr/bin/env python3 (conserved amino acid position)
from Bio import AlignIO
import sys
#data = np.genfromtxt("/home/tina/bin/MDR_aminoglycoside.csv", delimiter=",")
aln = "/home/tina/cd-hit/core_header_WP_000209090.1/seqret_out_WP_000209090.1.aln"
print("Alignment le ...
written 11 days ago by
sharmatina189059 • 40
• updated
1 day ago by
Biostar ♦♦ 20
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... Dear all
I have a example file like
>Sequence1
GARFIELDTHELASTFATCAT
>Sequence2
GARFIELDTHEFASTCAT
>Sequence3
GARFIELDTHEVERYFASTCAT
>Sequence4
THEFATCAT
>Sequence5
GARFIELDTHEVASTCAT
I need to do multiple sequnece alignment and count number o ...
written 14 days ago by
sharmatina189059 • 40
• updated
14 days ago by
manishaB • 0
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... I am running this command :
cd-hit -i merge_all_788_proteins.faa -o out_788_cd-hit50 -c 0.5 -n 2 -M 0
This gives me a fasta file having all the representative sequences (longest one) and `.clust` file having all the clusters file.
I need to get all protein sequences from clusters0 or cluster ...
written 14 days ago by
sharmatina189059 • 40
• updated
14 days ago by
_r_am ♦ 32k
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