User: sharmatina189059

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United States
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9 hours ago
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4 years, 12 months ago
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Posts by sharmatina189059

<prev • 127 results • page 1 of 13 • next >
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Comment: C: Mapping a draft sequence to a finished sequence using MUMmer.
... show-aligns ref_qry.delta refname qryname > ref_qry.aligns I could not understand What is refname and qryname and how to plot this alignment. Please help. ...
written 11 hours ago by sharmatina18905940
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Comment: C: Mapping a draft sequence to a finished sequence using MUMmer.
... What should be given in the step given below: show-aligns ref_qry.delta refname qryname > ref_qry.aligns What is refname and qryname and how to plot this alignment. ...
written 12 hours ago by sharmatina18905940
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Comment: A: Mapping a draft sequence to a finished sequence using MUMmer.
... What should be given in the step given below: show-aligns ref_qry.delta refname qryname > ref_qry.aligns What is refname and qryname and how to plot this alignment. ...
written 12 hours ago by sharmatina18905940
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Mapping a draft sequence to a finished sequence using MUMmer.
... Can anybody tell me why MUMmer is not working? nucmer --prefix=ref_qry ref.fasta qry.fasta show-coords -rcl ref_qry.delta > ref_qry.coords show-aligns ref_qry.delta refname qryname > ref_qry.aligns I am confused with refname and qryname. What are those ids. The coordin ...
mummer written 12 hours ago by sharmatina18905940
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Comment: C: why this code is not deleting entries from mysql table?
... Ohh that i have already done but not working. ...
written 4 months ago by sharmatina18905940
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why this code is not deleting entries from mysql table?
... This code is not deleting multiple entries given in input file from mysql table. "); while($r=mysql_fetch_row($dd_res)) { print ("$a "); #echo " $r[0] "; ...
mysql php written 4 months ago by sharmatina18905940 • updated 3 months ago by Biostar ♦♦ 20
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Comment: C: One gene shows alignment with core sequences as well as with accessory gene sequ
... I understand that BPGA is segregating core accessory and unique. Now i have a list of genes in which i want to analyse whether it belongs to core or accessory. For that i did blast and getting same genes in core as well as accessory at 50% identity with >=90%query coverage. Can a single gene belo ...
written 6 months ago by sharmatina18905940
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One gene shows alignment with core sequences as well as with accessory gene sequences at 50% identity?
... Hi I have done pan-genome analysis with 0.5% identity cutoff using BPGA tool. and it has given me core reference sequence, accessory reference file and unique sequences files. Now I have a list of sequence and i have aligned them with all 3 files i.e core, accessory and unique. There are some genes ...
bpga pan-genome with bpga written 6 months ago by sharmatina18905940 • updated 6 months ago by Mensur Dlakic6.9k
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Comment: C: Why blast with same query sequence shows two different query length?
... Yes. Can you please show me example. I really could not understand how they are calculating alignment length. ...
written 6 months ago by sharmatina18905940
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Why blast with same query sequence shows two different query length?
... Dear all I am using blast to align my sequences bot with command line as well as graphically. I want to know that my query sequence which is mentioned below has a total length of 169aa. I am aligning it with two sequence mentioned below. While aligning the blast results shows two different length of ...
blast written 6 months ago by sharmatina18905940 • updated 6 months ago by genomax91k

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