User: sharmatina189059

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30
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New User
Location:
United States
Last seen:
4 days, 20 hours ago
Joined:
3 years, 7 months ago
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Posts by sharmatina189059

<prev • 103 results • page 1 of 11 • next >
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Pan-genome using BPGA
... Hi Can anybody tell me how to get pan genome size using BPGA tool. It give core pan genome size which is the total number of core genes but how to know the pan genome size. Do we need to calculate it by own or BPGA gives us the value of total pan genome? ...
genome written 4 days ago by sharmatina18905930
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Comment: C: Discriminating ortholog and paralogs using Cd-hit
... ok.. let me try these tools.. thank you so much ...
written 4 months ago by sharmatina18905930
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Discriminating ortholog and paralogs using Cd-hit
... Dear all I have 40 genomes of bacterial and I need to identify ortholog and paralog genes along with core, dispensable and unique genes. I have used CD hit to make homologous gene clusters and calculate the genes in every cluster. 1- what to do for calculating core gene, accessory genes and unique ...
genome gene written 4 months ago by sharmatina18905930
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What does 16/304 MIC value mean?
... What does 16/304 MIC value mean? It is mentioned as measurement value in PATRIC database but what does it mean? ...
life sciences written 4 months ago by sharmatina18905930
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(Closed) How to change colors in heatmap according to the values?
... Dear all I am trying to generate a heatmap having values 0, 1, 2, 3 . I need different colors for these values and 3 has to be transparent. I am using below mentioned code with which heatmap is generated well but i am unable to change color pattern. Please help. library(heatmaply) heat ...
R written 5 months ago by sharmatina18905930 • updated 5 months ago by zx87547.5k
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How to draw gene architecture of bacterial genome using specific coordinates?
... Dear all I have a genome sequence for which i have a different coordinate file like this: AXXXX_XXXX 251962 252762 TnAs3 250165 250795 TnAs3 250791 250838 I need to make a figure representing the genome annotation of these 3 coordinates within min. coordinate range to max. coordinate range. How ca ...
genome written 6 months ago by sharmatina18905930
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Comment: C: Is there a tool for making a synteny blocks of a gene with its downstream and up
... Hi Sibelia is used for comparing only two genomes. I can not use it for multiple genomes. ...
written 6 months ago by sharmatina18905930
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Is there a tool for making a synteny blocks of a gene with its downstream and upstream genes using a bacterial genome sequence?
... Dear all I have some protein sequences and bacterial genomes. I need to have a figure showing a block diagram of upstream and dowstream genes of that particular gene within multiple bacterial genome. Is there any tool for making a synteny of one gene in multiple genomes of bacteria? ...
genome written 6 months ago by sharmatina18905930 • updated 6 months ago by Joseph Hughes2.7k
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Comment: C: how to change fasta headers?
... But I have retrieved it from NCBI ftp site and the format is same. AM I doing some error? ...
written 9 months ago by sharmatina18905930
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Comment: C: how to change fasta headers?
... I have edited my post. Thanks!! ...
written 9 months ago by sharmatina18905930

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Popular Question 4 months ago, created a question with more than 1,000 views. For genbank file parsing
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