User: sharmatina189059
sharmatina189059 • 40
- Reputation:
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- United States
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- 1 week, 3 days ago
- Joined:
- 4 years, 3 months ago
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Posts by sharmatina189059
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... Thanks for replying.. It works. ...
written 17 days ago by
sharmatina189059 • 40
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... Dear all
I have a file containing genome Ids like
470.771
470.773
......so on upto 1000
and I need to automate a command for all 1000 genome id.
Command is
p3-genome-fasta --contig 470.771 > out.contig
and I need a folder containing all the downloaded files.
Can anybody help m ...
written 18 days ago by
sharmatina189059 • 40
• updated
17 days ago by
JC ♦ 9.3k
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... Ok..M trying.. thank you so much for replying!! ...
written 19 days ago by
sharmatina189059 • 40
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... I need to align with customised dataset that's why writing my own code. ...
written 19 days ago by
sharmatina189059 • 40
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...
function getseq(t){
document.getElementById('SEQUENCE').value = "";
var myVal;
myVal = document.getElementById('SEQUENCE').value;
myVal += ''+ t;
document.getElementById('SEQUENCE').value = myVal;
}
function paste_examplep()
{
docum ...
written 19 days ago by
sharmatina189059 • 40
0
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1
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193
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1
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... Thank you for your response. My problem is solved now.
I had two genomes for which data was not there in the generated file, as soon as i removed those blank file, program runs well. ...
written 24 days ago by
sharmatina189059 • 40
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... Hi
I have created a dataset using contigs but having the same problem as mention above.Can you please tell us where we went wrong..
kover dataset info --dataset example.kover --kmers
Kmer sequences (fasta):
Traceback (most recent call last):
File "/home/tina/kover/kover/bin/kover ...
written 29 days ago by
sharmatina189059 • 40
0
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1
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193
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1
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... Hi
M having the same problem? Did you get any solution to the same. ...
written 29 days ago by
sharmatina189059 • 40
0
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92
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... What does >16/8 mg/L MIC value mean? if I have multiple values like this i.e. > 16/9, >16/13 can we convert this column in increasing or decreasing order? ...
written 4 months ago by
sharmatina189059 • 40
0
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173
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... Hi
Can anybody tell me how to get pan genome size using BPGA tool. It give core pan genome size which is the total number of core genes but how to know the pan genome size. Do we need to calculate it by own or BPGA gives us the value of total pan genome? ...
written 7 months ago by
sharmatina189059 • 40
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