User: sharmatina189059

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Posts by sharmatina189059

<prev • 41 results • page 1 of 5 • next >
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KEGG BLASTKOALA parameters
... Has anyone worked with BLASTKOALA tool from KEGG. I have annotated my protein sequences using this tool for getting K numbers.The results obtained showing that only 50% genome has been annotated. I want to know what parameters BLASTKOALA has been used. I could not find any literature where they have ...
blastkoala written 5 days ago by sharmatina1890590
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Query regarding KEGG database
... Dear all Can anybody tell me how to get interacting pathways form KEGG databases. I have a list of KO numbers with associated multiple pathways. Has anyone used KEGG API to retrieve interacting pathways too? ...
interacting pathways kegg written 6 days ago by sharmatina1890590
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KEGG data parse
... Hello I have a file like ENTRY EC 1.1.1.1 Enzyme NAME alcohol dehydrogenase; CLASS Oxidoreductases; SYSNAME alcohol:NAD+ oxidoreductase REACTION (1) a primary alcohol + NAD+ = an aldehyde + NADH + H+ [RN:R00623]; ALL_REAC R00623 ...
data parsing R written 7 days ago by sharmatina1890590 • updated 7 days ago by Paul860
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problem in fetching data using excel
... I have two columns in excel one has ids and another has its values. Like IDs pmid Ko43748 pmid:686888 Ko43748 pmid:755566 so the problem is ..since ids are duplicate in first columns but has different pmid. I want my result in same cell like.. ...
genome kegg data written 7 days ago by sharmatina1890590 • updated 7 days ago by george.ry1.0k
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Comment: C: KEGG database query
... Really thanks it works..thankyou so much ...
written 8 days ago by sharmatina1890590
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Comment: C: KEGG database query
... And why single KO ID gives multiple pathway name? ...
written 8 days ago by sharmatina1890590
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Comment: C: KEGG database query
... Thanks for sending your reply. It really works but what if I have a file of 1900 KO. How to use multiple KO for this purpose. ...
written 8 days ago by sharmatina1890590
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KEGG database query
... Dear all I have 1900 KEGG KO Ids like K03821, k21699 and so on . I have retrieved it for my genome using BLASTKoala. I want to retrieve corresponding pathway name, substrate, product, enzyme name, enzyme class, interacting pathways, reaction type and source. please let me know how to use kegg api ...
kegg database query written 8 days ago by sharmatina1890590 • updated 8 days ago by Pierre Lindenbaum99k
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Query regarding RCSBPDB
... Dear all Can anybody tell me how can I get co-crystallized structure ID from RCSB PDB or Uniprot. I have 88 PDBIDs and its corresponding Uniprot Ids. Can anybody tell me how can I retrieve this data (it would really be helpful if someone has fetch this type of data programmatically). ...
rcsb-pdb written 9 days ago by sharmatina1890590 • updated 9 days ago by jrj.healey2.6k
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Comment: C: error while executing code for parsing genbank file
... I have already install Bio::GenBankParser module, but while executing this code it is showing error. ...
written 4 weeks ago by sharmatina1890590

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