User: sharmatina189059

Reputation:
40
Status:
New User
Location:
United States
Last seen:
1 week, 3 days ago
Joined:
4 years, 3 months ago
Email:
s***************@gmail.com

Posts by sharmatina189059

<prev • 112 results • page 1 of 12 • next >
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Comment: C: automate command using bash or perl script?
... Thanks for replying.. It works. ...
written 17 days ago by sharmatina18905940
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automate command using bash or perl script?
... Dear all I have a file containing genome Ids like 470.771 470.773 ......so on upto 1000 and I need to automate a command for all 1000 genome id. Command is p3-genome-fasta --contig 470.771 > out.contig and I need a folder containing all the downloaded files. Can anybody help m ...
perl assembly rast bash written 18 days ago by sharmatina18905940 • updated 17 days ago by JC9.3k
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Comment: C: Setting up local blast in webserver
... Ok..M trying.. thank you so much for replying!! ...
written 19 days ago by sharmatina18905940
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Comment: C: Setting up local blast in webserver
... I need to align with customised dataset that's why writing my own code. ...
written 19 days ago by sharmatina18905940
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Setting up local blast in webserver
... function getseq(t){ document.getElementById('SEQUENCE').value = ""; var myVal; myVal = document.getElementById('SEQUENCE').value; myVal += ''+ t; document.getElementById('SEQUENCE').value = myVal; } function paste_examplep() { docum ...
blast php and mysql written 19 days ago by sharmatina18905940
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Comment: C: Create Dataset from reads -- IndexError: list index out of range
... Thank you for your response. My problem is solved now. I had two genomes for which data was not there in the generated file, as soon as i removed those blank file, program runs well. ...
written 24 days ago by sharmatina18905940
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Comment: C: Create Dataset from reads -- IndexError: list index out of range
... Hi I have created a dataset using contigs but having the same problem as mention above.Can you please tell us where we went wrong.. kover dataset info --dataset example.kover --kmers Kmer sequences (fasta): Traceback (most recent call last): File "/home/tina/kover/kover/bin/kover ...
written 29 days ago by sharmatina18905940
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Comment: C: Create Dataset from reads -- IndexError: list index out of range
... Hi M having the same problem? Did you get any solution to the same. ...
written 29 days ago by sharmatina18905940
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(Closed) What does >16/8 mg/L MIC value mean?
... What does >16/8 mg/L MIC value mean? if I have multiple values like this i.e. > 16/9, >16/13 can we convert this column in increasing or decreasing order? ...
genome written 4 months ago by sharmatina18905940
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Pan-genome using BPGA
... Hi Can anybody tell me how to get pan genome size using BPGA tool. It give core pan genome size which is the total number of core genes but how to know the pan genome size. Do we need to calculate it by own or BPGA gives us the value of total pan genome? ...
genome written 7 months ago by sharmatina18905940

Latest awards to sharmatina189059

Popular Question 4 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 4 months ago, created a question with more than 1,000 views. For Batch Entrez (gene sequences)
Popular Question 7 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 11 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 11 months ago, created a question with more than 1,000 views. For Batch Entrez (gene sequences)
Centurion 12 months ago, created 100 posts.
Popular Question 14 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 16 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 16 months ago, created a question with more than 1,000 views. For blast alignemnt query coverage

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