Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: sharmatina189059

gravatar for sharmatina189059
Reputation:
40
Status:
New User
Location:
United States
Last seen:
4 hours ago
Joined:
5 years, 3 months ago
Email:
s***************@gmail.com

Posts by sharmatina189059

<prev • 139 results • page 1 of 14 • next >
0
votes
0
answers
49
views
0
answers
Comment: C: How to compare two file and print matching?
... import pandas as pd climate_temp = pd.read_csv("/dataset") climate_precip = pd.read_csv("/susceptible") inner_merged = pd.merge(climate_temp, climate_precip, on = "Filename") inner_merged.head() I tried this and this works well. Thanks ...
written 4 days ago by sharmatina189059 • 40
0
votes
0
answers
49
views
0
answers
Comment: C: How to compare two file and print matching?
... I have read this but in my case the solution given is not working. Please do let me know what else can be done? ...
written 4 days ago by sharmatina189059 • 40
0
votes
0
answers
49
views
0
answers
Comment: C: How to compare two file and print matching?
... join -t $'\t' -1 1 -2 1 <(sort -t $'\t' -k1,1 susceptible) <(sort -t $'\t' -k1,1 dataset) This is not working in my case. ...
written 4 days ago by sharmatina189059 • 40
0
votes
0
answers
49
views
0
answers
(Closed) How to compare two file and print matching?
... i have two files file 1 Genome_no. Organism_name Filename 1 Organism1 470.1359 2 Organism2 470.7416 3 Organism3 470.7433 4 Organism4 470.1550 5 Organism5 470.1551 and file2 Acinetobacter baumannii strain MRSN10372 470.7416 Acinetobacter baumannii strain MRSN11698 ...
perl sed awk written 4 days ago by sharmatina189059 • 40 • updated 4 days ago by Pierre Lindenbaum ♦ 133k
0
votes
2
answers
134
views
2
answers
Comment: C: how to unique a file row-wise?
... Thanks for the reply perl -MList::Util=uniq -alne 'print join " ", sort { $a <=> $b } uniq @F' out_new_prophecy > perl_out_prophecy This also works!! ...
written 6 days ago by sharmatina189059 • 40
0
votes
2
answers
134
views
2
answers
Comment: C: how to unique a file row-wise?
... It is actually a frequency table I got it using Prophecy (Emboss module). I need to check the number of isolates in which these variations exist. That's why I want to make it sort so that I can read it easily. Can you please help? I could not understand how to make it unique row-wise? ...
written 6 days ago by sharmatina189059 • 40
5
votes
2
answers
134
views
6 follow
2
answers
how to unique a file row-wise?
... Hello all I have a input file like this: 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 786 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 787 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 786 0 0 0 ...
perl awk sed linux written 6 days ago by sharmatina189059 • 40 • updated 6 days ago by dare_devil • 1.3k
0
votes
0
answers
152
views
0
answers
How to get variation data from MSA file generated using ClustalW for protein sequences?
... #!/usr/bin/env python3 (conserved amino acid position) from Bio import AlignIO import sys #data = np.genfromtxt("/home/tina/bin/MDR_aminoglycoside.csv", delimiter=",") aln = "/home/tina/cd-hit/core_header_WP_000209090.1/seqret_out_WP_000209090.1.aln" print("Alignment le ...
variation clustalw msa written 11 days ago by sharmatina189059 • 40 • updated 1 day ago by Biostar ♦♦ 20
0
votes
1
answer
92
views
1
answer
How to read a multiple sequence alignment file?
... Dear all I have a example file like >Sequence1 GARFIELDTHELASTFATCAT >Sequence2 GARFIELDTHEFASTCAT >Sequence3 GARFIELDTHEVERYFASTCAT >Sequence4 THEFATCAT >Sequence5 GARFIELDTHEVASTCAT I need to do multiple sequnece alignment and count number o ...
multiple sequence alignment written 14 days ago by sharmatina189059 • 40 • updated 14 days ago by manishaB • 0
0
votes
1
answer
77
views
1
answers
Comment: C: can we retrieve protein sequences from the clusters of CD-hit?
... I am running this command : cd-hit -i merge_all_788_proteins.faa -o out_788_cd-hit50 -c 0.5 -n 2 -M 0 This gives me a fasta file having all the representative sequences (longest one) and `.clust` file having all the clusters file. I need to get all protein sequences from clusters0 or cluster ...
written 14 days ago by sharmatina189059 • 40 • updated 14 days ago by _r_am ♦ 32k

Latest awards to sharmatina189059

Popular Question 23 days ago, created a question with more than 1,000 views. For Pathway annotation using KEGG
Popular Question 3 months ago, created a question with more than 1,000 views. For how to download all protein sequnces of a bacteria using ncbi ftp site?
Popular Question 3 months ago, created a question with more than 1,000 views. For NCBI CDS(total) and genes (coding)
Popular Question 3 months ago, created a question with more than 1,000 views. For Batch Entrez (gene sequences)
Popular Question 3 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 3 months ago, created a question with more than 1,000 views. For KEGG database query
Popular Question 7 months ago, created a question with more than 1,000 views. For how to download all protein sequnces of a bacteria using ncbi ftp site?
Popular Question 7 months ago, created a question with more than 1,000 views. For NCBI CDS(total) and genes (coding)
Popular Question 7 months ago, created a question with more than 1,000 views. For Batch Entrez (gene sequences)
Popular Question 7 months ago, created a question with more than 1,000 views. For Retrieve data from Excel sheet for Mysql table
Popular Question 9 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 9 months ago, created a question with more than 1,000 views. For how to download all protein sequnces of a bacteria using ncbi ftp site?
Popular Question 9 months ago, created a question with more than 1,000 views. For NCBI CDS(total) and genes (coding)
Popular Question 10 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 16 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 16 months ago, created a question with more than 1,000 views. For Batch Entrez (gene sequences)
Popular Question 19 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 23 months ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 23 months ago, created a question with more than 1,000 views. For Batch Entrez (gene sequences)
Centurion 2.0 years ago, created 100 posts.
Popular Question 2.2 years ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 2.3 years ago, created a question with more than 1,000 views. For genbank file parsing
Popular Question 2.4 years ago, created a question with more than 1,000 views. For blast alignemnt query coverage
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2339 users visited in the last hour
_