User: sharmatina189059
sharmatina189059 • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- United States
- Last seen:
- 4 days, 20 hours ago
- Joined:
- 3 years, 7 months ago
- Email:
- s***************@gmail.com
Posts by sharmatina189059
<prev
• 103 results •
page 1 of 11 •
next >
0
votes
0
answers
42
views
0
answers
... Hi
Can anybody tell me how to get pan genome size using BPGA tool. It give core pan genome size which is the total number of core genes but how to know the pan genome size. Do we need to calculate it by own or BPGA gives us the value of total pan genome? ...
written 4 days ago by
sharmatina189059 • 30
0
votes
0
answers
210
views
0
answers
... ok.. let me try these tools.. thank you so much
...
written 4 months ago by
sharmatina189059 • 30
1
vote
0
answers
210
views
0
answers
... Dear all
I have 40 genomes of bacterial and I need to identify ortholog and paralog genes along with core, dispensable and unique genes. I have used CD hit to make homologous gene clusters and calculate the genes in every cluster.
1- what to do for calculating core gene, accessory genes and unique ...
written 4 months ago by
sharmatina189059 • 30
0
votes
0
answers
102
views
0
answers
... What does 16/304 MIC value mean? It is mentioned as measurement value in PATRIC database but what does it mean? ...
written 4 months ago by
sharmatina189059 • 30
0
votes
0
answers
292
views
0
answers
... Dear all
I am trying to generate a heatmap having values 0, 1, 2, 3 . I need different colors for these values and 3 has to be transparent. I am using below mentioned code with which heatmap is generated well but i am unable to change color pattern.
Please help.
library(heatmaply)
heat ...
written 5 months ago by
sharmatina189059 • 30
• updated
5 months ago by
zx8754 ♦ 7.5k
0
votes
0
answers
160
views
0
answers
... Dear all
I have a genome sequence for which i have a different coordinate file like this:
AXXXX_XXXX 251962 252762 TnAs3 250165 250795 TnAs3 250791 250838
I need to make a figure representing the genome annotation of these 3 coordinates within min. coordinate range to max. coordinate range. How ca ...
written 6 months ago by
sharmatina189059 • 30
0
votes
1
answer
369
views
1
answers
... Hi
Sibelia is used for comparing only two genomes. I can not use it for multiple genomes. ...
written 6 months ago by
sharmatina189059 • 30
1
vote
1
answer
369
views
5 follow
1
answer
... Dear all
I have some protein sequences and bacterial genomes. I need to have a figure showing a block diagram of upstream and dowstream genes of that particular gene within multiple bacterial genome. Is there any tool for making a synteny of one gene in multiple genomes of bacteria? ...
written 6 months ago by
sharmatina189059 • 30
• updated
6 months ago by
Joseph Hughes • 2.7k
0
votes
3
answers
395
views
3
answers
Comment:
C: how to change fasta headers?
... But I have retrieved it from NCBI ftp site and the format is same.
AM I doing some error? ...
written 9 months ago by
sharmatina189059 • 30
0
votes
3
answers
395
views
3
answers
Comment:
C: how to change fasta headers?
... I have edited my post. Thanks!! ...
written 9 months ago by
sharmatina189059 • 30
Latest awards to sharmatina189059
Popular Question
4 months ago,
created a question with more than 1,000 views.
For genbank file parsing
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Batch Entrez (gene sequences)
Centurion
5 months ago,
created 100 posts.
Popular Question
6 months ago,
created a question with more than 1,000 views.
For genbank file parsing
Popular Question
8 months ago,
created a question with more than 1,000 views.
For genbank file parsing
Popular Question
8 months ago,
created a question with more than 1,000 views.
For blast alignemnt query coverage
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 943 users visited in the last hour