User: sharmatina189059
sharmatina189059 • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- United States
- Last seen:
- 9 hours ago
- Joined:
- 4 years, 12 months ago
- Email:
- s***************@gmail.com
Posts by sharmatina189059
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... show-aligns ref_qry.delta refname qryname > ref_qry.aligns
I could not understand What is refname and qryname and how to plot this alignment. Please help. ...
written 11 hours ago by
sharmatina189059 • 40
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... What should be given in the step given below:
show-aligns ref_qry.delta refname qryname > ref_qry.aligns
What is refname and qryname and how to plot this alignment. ...
written 12 hours ago by
sharmatina189059 • 40
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... What should be given in the step given below:
show-aligns ref_qry.delta refname qryname > ref_qry.aligns
What is refname and qryname and how to plot this alignment. ...
written 12 hours ago by
sharmatina189059 • 40
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... Can anybody tell me why MUMmer is not working?
nucmer --prefix=ref_qry ref.fasta qry.fasta
show-coords -rcl ref_qry.delta > ref_qry.coords
show-aligns ref_qry.delta refname qryname > ref_qry.aligns
I am confused with refname and qryname. What are those ids.
The coordin ...
written 12 hours ago by
sharmatina189059 • 40
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... Ohh that i have already done but not working. ...
written 4 months ago by
sharmatina189059 • 40
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152
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... This code is not deleting multiple entries given in input file from mysql table.
");
while($r=mysql_fetch_row($dd_res))
{
print ("$a ");
#echo " $r[0] ";
...
written 4 months ago by
sharmatina189059 • 40
• updated
3 months ago by
Biostar ♦♦ 20
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... I understand that BPGA is segregating core accessory and unique. Now i have a list of genes in which i want to analyse whether it belongs to core or accessory. For that i did blast and getting same genes in core as well as accessory at 50% identity with >=90%query coverage. Can a single gene belo ...
written 6 months ago by
sharmatina189059 • 40
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... Hi
I have done pan-genome analysis with 0.5% identity cutoff using BPGA tool. and it has given me core reference sequence, accessory reference file and unique sequences files. Now I have a list of sequence and i have aligned them with all 3 files i.e core, accessory and unique. There are some genes ...
written 6 months ago by
sharmatina189059 • 40
• updated
6 months ago by
Mensur Dlakic • 6.9k
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... Yes. Can you please show me example. I really could not understand how they are calculating alignment length. ...
written 6 months ago by
sharmatina189059 • 40
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... Dear all
I am using blast to align my sequences bot with command line as well as graphically. I want to know that my query sequence which is mentioned below has a total length of 169aa. I am aligning it with two sequence mentioned below. While aligning the blast results shows two different length of ...
written 6 months ago by
sharmatina189059 • 40
• updated
6 months ago by
genomax ♦ 91k
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