User: b.nota
b.nota • 3.5k
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Posts by b.nota
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Comment:
C: heatmap.2 reorder branches
... Yeah it doesn't work, with reorder function you can only switch two leafs in the same branch. I wanted to switch whole branches containing more leafs per branch.
I have tried your weights approach, but can't find the right settings to get exactly the same branches but then switched.
Thanks anyway ...
written 6 weeks ago by
b.nota • 3.5k
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Comment:
C: heatmap.2 reorder branches
... Great! Thanks for explaining it. I actually wanted to move whole branches (containing more leafs). Like in your example put the mazda group before Datsun.
neworder = c("Hornet Sportabout", "Valiant", "Hornet 4 Drive", "Mazda RX4", "Mazda RX4 Wag", "Datsun 710")
row.dd.reordered = reorder(r ...
written 6 weeks ago by
b.nota • 3.5k
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... It's not about punishment, it's more a matter of removing rotten apples. That's my ignorant opinion.
If OP can't take good advice (learn scripting), don't come here spoiling it for the rest. ...
written 8 weeks ago by
b.nota • 3.5k
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... What ever, I think I am gonna try stack overflow for while, and downvote rethorical questions such as these there. Will save a lot of my ignorant time. ...
written 8 weeks ago by
b.nota • 3.5k
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Comment:
C: What has happened to PatScan?
... Yes I am very ignorant. Thanks for that!
Good luck! You'll probably need it very much!
I hope with your attitude someone is crazy enough to help you... ...
written 8 weeks ago by
b.nota • 3.5k
0
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Comment:
C: What has happened to PatScan?
... Maybe the time has come... the time that you'll have to learn how to use the command line... ...
written 8 weeks ago by
b.nota • 3.5k
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... Then try [venny][1]
[1]: http://bioinfogp.cnb.csic.es/tools/venny/ ...
written 8 weeks ago by
b.nota • 3.5k
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... The `gplots` lib in R contains a `venn()` function.
?venn ...
written 8 weeks ago by
b.nota • 3.5k
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... When I worked with non-model species, a decade ago, I used blast2go software for this. But I am not sure if this is still the best approach nowadays (and if it is still free software). I 've been working for too long with model species now. ...
written 9 weeks ago by
b.nota • 3.5k
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... I am not sure for clusterProfiler in particular, but normally if you want to do KEGG or GO analysis with non-model species, you'll first need to know which genes of your mushroom map to which KEGG pathway or GO term. I don't think TRINITY identifiers are sufficient for this purpose. ...
written 9 weeks ago by
b.nota • 3.5k
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