Moderator: Benn

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Benn6.9k
Reputation:
6,910
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Location:
Netherlands
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Google Scholar Page
Last seen:
6 hours ago
Joined:
3 years, 8 months ago
Email:
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Posts by Benn

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Comment: C: How to transfer big sequencing data abroad on internet?
... Or setup an FTP server yourself. ...
written 17 hours ago by Benn6.9k
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Comment: C: Homer error, how to call homer properly in a script? and how to know that it's a
... It is quite well described how to install and configure Homer. Follow the instructions found [here][1], or call Chuck Norris. [1]: http://homer.ucsd.edu/homer/introduction/install.html ...
written 17 hours ago by Benn6.9k
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Comment: C: Bootstrap values on the phylogenetic tree in Ape r package
... Maybe show then what you do have. Some code might also be useful. ...
written 1 day ago by Benn6.9k
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Comment: C: Where can I get promotif?
... Did you try this address as well? Or are you in the UK? > gail@bsm.bioc.ucl.ac.uk (if mailing from outside uk) Btw. Did you notice the website is from 1996? There might be a chance that the website and tool is not maintained anymore. Did you think of that already? ...
written 2 days ago by Benn6.9k
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Comment: C: Where can I get promotif?
... > If you experience problems in accessing the files by ftp contact the > authors via e-mail at one of the following addresses: > gail@uk.ac.ucl.bioc.bsm or thornton@uk.ac.ucl.bioc.bsm . ...
written 2 days ago by Benn6.9k
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Comment: C: On identifying differentially expressed genes using RNA-Seq (fpkm) data.
... No there are not sound methods to do DE analysis with FPKM values. To do sound statistics use counts, and then use limma voom or edgeR or the like. If you still want to use FPKM values, feel free to do it, but don't ask for the best method, because there ain't one. ...
written 6 days ago by Benn6.9k
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Comment: C: R, plot text table
... Yes the example colors text, but in the manual you can also find how to color background. ...
written 8 days ago by Benn6.9k
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Answer: A: R, plot text table
... Like RamRS is already telling you, it is not something R is useful for. However, it is possible with package crayon. The following example is taken from this [blog][1]. library(crayon) cat(green( 'I am a green line ' %+% blue$underline$bold('with a blue substring') %+% ...
written 8 days ago by Benn6.9k
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Comment: C: Target cancer sequencing: can't find database with raw data and related publicat
... I am not sure if these raw data are available, because of privacy policies. ...
written 8 days ago by Benn6.9k
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Comment: C: How to select names with wildcard from AAStringSet (biostrings)
... I'll go for the one-liner, but thanks anyways! ...
written 9 days ago by Benn6.9k

Latest awards to Benn

Oracle 2 days ago, created more than 1,000 posts (questions + answers + comments).
Commentator 27 days ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Scholar 7 weeks ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: trimming the paired end reads with cutadapt
Commentator 11 weeks ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Great Question 4 months ago, created a question with more than 5,000 views. For heatmap.2 reorder branches
Popular Question 4 months ago, created a question with more than 1,000 views. For phred 33 from Ion S5?
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Scholar 5 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: trimming the paired end reads with cutadapt
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Scholar 5 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: trimming the paired end reads with cutadapt
Scholar 5 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Popular Question 6 months ago, created a question with more than 1,000 views. For phred 33 from Ion S5?
Scholar 6 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Appreciated 7 months ago, created a post with more than 5 votes. For A: Bioinformatics freelancers needed
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Bioinformatics freelancers needed
Appreciated 8 months ago, created a post with more than 5 votes. For A: Bioinformatics freelancers needed
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: trimming the paired end reads with cutadapt

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