User: b.nota

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b.nota3.6k
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Posts by b.nota

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Comment: C: gogadget: an R package for go analysis visualization and interpretation
... Hi David, I haven't heard back, so I hope no news is good news? If you're still having problem using `gogadget` with non-model organisms, please open a new question with some of your code in it as well, and tag it with `gogadget`. I can help you then with the code adjustment which is probably necess ...
written 6 weeks ago by b.nota3.6k
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Answer: A: gogadget: an R package for go analysis visualization and interpretation
... NEWS 2017/10/27 I recently found out that the `gogadget.gmt` function didn't work properly anymore. Probably the behavior of `dplyr` functions changed, when I (accidentally) updated some packages. However, this function is fixed in the newest version of `gogadget` v2.1. ...
written 6 weeks ago by b.nota3.6k
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Comment: C: Where are .motif files from homer knownResults?
... Wow, thanks for your hacking solution man. I didn't expect any solution anymore, I thought it was just me. So when my co-workers asked again for the motifs last week, I found out that you can also use the old method in homer (without the svg). You'll have to include `-seqlogo` to the `findMotifsGeno ...
written 6 weeks ago by b.nota3.6k
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Comment: C: Is PatScan RNA pattern searcher no longer available as an online webtool?
... Sad to hear you are still in your mantrum. Good luck with your research endeavors, hope you find a solution for your problem(s) soon. ...
written 10 weeks ago by b.nota3.6k
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Where are .motif files from homer knownResults?
... I also asked this question on [SE bioinformatics][1], but since I didn't get any answers yet, I would like to ask it here as well. Hope you don't mind. I have been using homer's `findMotifsGenome.pl`, but with my new version (v4.9.1) of homer I don't get `.motif` files in the knownResults folder. I ...
homer chip-seq atac-seq motifs written 3 months ago by b.nota3.6k • updated 6 weeks ago by Malcolm.Cook790
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Comment: C: heatmap.2 reorder branches
... Yeah it doesn't work, with reorder function you can only switch two leafs in the same branch. I wanted to switch whole branches containing more leafs per branch. I have tried your weights approach, but can't find the right settings to get exactly the same branches but then switched. Thanks anyway ...
written 5 months ago by b.nota3.6k
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Comment: C: heatmap.2 reorder branches
... Great! Thanks for explaining it. I actually wanted to move whole branches (containing more leafs). Like in your example put the mazda group before Datsun. neworder = c("Hornet Sportabout", "Valiant", "Hornet 4 Drive", "Mazda RX4", "Mazda RX4 Wag", "Datsun 710") row.dd.reordered = reorder(r ...
written 5 months ago by b.nota3.6k
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Comment: C: Is PatScan RNA pattern searcher no longer available as an online webtool?
... It's not about punishment, it's more a matter of removing rotten apples. That's my ignorant opinion. If OP can't take good advice (learn scripting), don't come here spoiling it for the rest. ...
written 5 months ago by b.nota3.6k
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Comment: C: Is PatScan RNA pattern searcher no longer available as an online webtool?
... What ever, I think I am gonna try stack overflow for while, and downvote rethorical questions such as these there. Will save a lot of my ignorant time. ...
written 5 months ago by b.nota3.6k
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Comment: C: What has happened to PatScan?
... Yes I am very ignorant. Thanks for that! Good luck! You'll probably need it very much! I hope with your attitude someone is crazy enough to help you... ...
written 5 months ago by b.nota3.6k

Latest awards to b.nota

Popular Question 4 weeks ago, created a question with more than 1,000 views. For Find genes of enriched known motif results in HOMER
Appreciated 6 weeks ago, created a post with more than 5 votes. For A: Bioinformatics freelancers needed
Appreciated 8 weeks ago, created a post with more than 5 votes. For A: Bioinformatics freelancers needed
Scholar 3 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Blasting against multiple fasta file
Popular Question 5 months ago, created a question with more than 1,000 views. For Find genes of enriched known motif results in HOMER
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: Bioinformatics freelancers needed
Appreciated 5 months ago, created a post with more than 5 votes. For A: Bioinformatics freelancers needed
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Blasting against multiple fasta file
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
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Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Fastest pairwise alignment for 10,000 sequences
Scholar 6 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: RNA to protein in bash?
Popular Question 7 months ago, created a question with more than 1,000 views. For Find genes of enriched known motif results in HOMER
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Scholar 11 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Blasting against multiple fasta file
Appreciated 12 months ago, created a post with more than 5 votes. For A: Bioinformatics freelancers needed
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Blasting against multiple fasta file
Scholar 12 months ago, created an answer that has been accepted. For C: Find genes of enriched known motif results in HOMER
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