Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: Yaseen Ladak

gravatar for Yaseen Ladak
Yaseen Ladak • 20
Reputation:
20
Status:
New User
Location:
United Kingdom, London, Imperial College London
Last seen:
1 year, 7 months ago
Joined:
2 years, 8 months ago
Email:
y***********@gmail.com

Posts by Yaseen Ladak

<prev • 19 results • page 1 of 2 • next >
0
votes
0
answers
600
views
0
answers
Comment: C: Accessor methods for Bio::SeqIO
... Thank you very much. Thats very helpfiul. ...
written 20 months ago by Yaseen Ladak • 20
0
votes
0
answers
600
views
0
answers
Comment: C: Accessor methods for Bio::SeqIO
... Thank you for editing. What is 101010 button and is it for code formatting? When can I use that? ...
written 20 months ago by Yaseen Ladak • 20
0
votes
0
answers
600
views
0
answers
Accessor methods for Bio::SeqIO
... Hello All, I need some help. I am trying to use Bio::SeqIO. How can I know what accessor functions does this module have like for example: my $seqin = Bio::SeqIO->new(-file => "myfile.fa", -format => "fasta"); my $seqout = Bio::SeqIO->new(-file => ">myfile_100.fa" ...
fasta sequence bio perl sequencing written 20 months ago by Yaseen Ladak • 20 • updated 20 months ago by WouterDeCoster ♦ 30k
0
votes
0
answers
965
views
0
answers
Comment: C: Raw counts - FeatureCounts (Rsubread), HT Seq and BEdtools
... Thank you. Thats very helpful :) ...
written 20 months ago by Yaseen Ladak • 20
0
votes
0
answers
965
views
0
answers
Comment: A: Raw counts - FeatureCounts (Rsubread), HT Seq and BEdtools
... Thanks, I would be more careful next time. ...
written 20 months ago by Yaseen Ladak • 20
2
votes
0
answers
965
views
0
answers
Raw counts - FeatureCounts (Rsubread), HT Seq and BEdtools
... Dear All, I would really appreciate some help. I have a aligned BAM file which is sorted. This file was obtained from paired end sequencing. I am trying to find the raw counts which fall in the regions mentioned in the GTF. The GTF is below: ********************************* 1dh10b ena e ...
next-gen rna-seq written 20 months ago by Yaseen Ladak • 20
0
votes
2
answers
932
views
2
answers
Answer: A: Cuffnorm output files gives only geneid and not gene names in annotation
... Thanks but genes.attr_table does not give me the count. I want to have the counts with the gene id and gene names. ...
written 2.2 years ago by Yaseen Ladak • 20
0
votes
2
answers
697
views
2
answers
Answer: A: Cuffnorm for normalisatioin of counts
... Thank you very much really grateful for your support and this forum! ...
written 2.2 years ago by Yaseen Ladak • 20
0
votes
2
answers
932
views
2
answers
Cuffnorm output files gives only geneid and not gene names in annotation
... Hi All, I need a little help, the output of cuffnorm from the genes.fpkm_table file is as follows: tracking_id q1_0 q2_0 ECDH10B_0001 0 0 ECDH10B_0002 12.7841 26.1493 ECDH10B_0003 20.8691 21.9675 ECDH10B_0004 25.1604 47.0917 How can I include the gene name in the output file in addition to the ge ...
rna-seq written 2.2 years ago by Yaseen Ladak • 20
2
votes
2
answers
697
views
2
answers
Cuffnorm for normalisatioin of counts
... Hello All, I am trying to use cuffnorm to normalise the counts. However, I am giving inputs as BAM files and I have the GTF obtained from ensembl. Do I need to use cufflinks as the first step to generate the GTF to be used with Cuffnorm or can I use the GTF that I have obtained from emnsebl for the ...
rna-seq written 2.2 years ago by Yaseen Ladak • 20

Latest awards to Yaseen Ladak

No awards yet. Soon to come :-)
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1892 users visited in the last hour