User: a.aiezza

gravatar for a.aiezza
a.aiezza30
Reputation:
30
Status:
New User
Location:
United States
Website:
https://blogs.rocheste...
Twitter:
scribaniwannabe
Scholar ID:
Google Scholar Page
Last seen:
15 hours ago
Joined:
2 years ago
Email:
a*******@gmail.com

Bioinformatics Trainer/Specialist at the University of Rochester

Posts by a.aiezza

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Entrez direct E-utilities - "efetch" command to retrieve CDS with protein access
... curious, what kind of ID is that? ...
written 4 months ago by a.aiezza30
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Comment: C: Finding a sequence in a fasta file
... `dreg` definitely took care of me. Thank you. ...
written 5 months ago by a.aiezza30
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Comment: C: How To Identify Targets Of A Transcription Factor ?
... @Travis, I think so too, except I have not gotten it to work yet. ...
written 17 months ago by a.aiezza30
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Comment: C: Can bowtie2-build index for gzipped file?
... They should really get around to making this a feature. ...
written 19 months ago by a.aiezza30
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Accessing Expression Levels for Genes of Interest from GEO Experiments
... I have a list of 100 lncRNAs. For each of these RNAs, I would like to query GEO to find any experiments that used a high throughput sequencing platform and detected expression levels of that RNA in FPKM. To filter further, I'd like to have those expression levels found in controls only. The last fil ...
geo fpkm rna rna-seq lncrna written 20 months ago by a.aiezza30 • updated 5 weeks ago by Biostar ♦♦ 20
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Comment: C: Unbelievably rapid NGS analysis by Churchill
... @Istvan I'm slowly realizing that... Thank you for your input. This product is absolute garbage. The team that created it should be ashamed to have their name on something of such poor quality. I'm going to attempt to switch to bcbio-nextgen. It seems to have incredible documentation and a much larg ...
written 24 months ago by a.aiezza30
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Comment: C: Unbelievably rapid NGS analysis by Churchill
... Sorry for reviving this nine-month-old thread, but I have been working with Churchill for a while now and have yet to run it to completion with sample data both on a single computer and in a cluster environment. I've tried a lot of different things but nothing has seemed to work. There is little dis ...
written 24 months ago by a.aiezza30

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Supporter 12 months ago, voted at least 25 times.

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